View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1715_low_15 (Length: 575)
Name: NF1715_low_15
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 515; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 13 - 560
Target Start/End: Original strand, 31909773 - 31910316
Alignment:
| Q |
13 |
aatattattggttattttcggggggtttcgttctgattttgaatcatgtaagtgaggtttaggtcgtggcattgttaataattattagccatttttgaaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31909773 |
aatattattggttattttcggggggtttcgttctgattttgaatcatgtaagtgaggtttaggtcgtggcattgttaataattattagccatttttgaaa |
31909872 |
T |
|
| Q |
113 |
cgttttcattctatcaagtattaaacaggcgggcgagtctagattgaaagaaaaaatggatgtgttcaaagagtggacatctagatgaccatggaaagag |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31909873 |
cgttttcattctatcaagtattaaacaggcg----agtctagattgaaagaaaaaatggatgtgttcaaagagtggacatctagatgaccatggaaagag |
31909968 |
T |
|
| Q |
213 |
aggaaaagaacaaaggagtgtggcactccacaagtggtgtctagaattatgcaagactgtatctgaaaatgagactgaactttactttgaattcatcttg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
31909969 |
aggaaaagaacaaaggagtgtggcactccacaagtggtgtctagaattatgcaagactgtatctgaaaatgagactgaacttcactttgaattcatcttg |
31910068 |
T |
|
| Q |
313 |
catagttttttgctttcgttcacacttaaaattttatcatctgtttctgttgggatttgattcaggtccttgtggatgcataatgcactcatgatggttc |
412 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
31910069 |
catagtttttcgctttcgttcacacttaaaattttatcatctgtttctgttgggatttgattcaggtccttgtggatgcagaatgcactcatgatggttc |
31910168 |
T |
|
| Q |
413 |
agttaaacatattcagaagttcaacattggggctggactactcttcaataaattttggtgtaatgtaacccacatttattatctttttcttttgtatctc |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31910169 |
agttaaacatattcagaagttcaacattggggatggactactcttcaataaattttggtgtaatgtaacccacatttattatctttttcttttgtatctc |
31910268 |
T |
|
| Q |
513 |
accacagctgaatctttttcttttattgtaacttatctatgatgtttg |
560 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31910269 |
accacagctgaatctttttcttttattgtaacttatctatgatgtttg |
31910316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 84 - 255
Target Start/End: Original strand, 31901220 - 31901387
Alignment:
| Q |
84 |
ttgttaataattattagccatttttgaaacgttttcattctatcaagtattaaacaggcgggcgagtctagattgaaagaaaaaatggatgtgttcaaag |
183 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||| | ||||||||||| |||||| ||||||||||||||| | |
|
|
| T |
31901220 |
ttgttaataattattagccttttttgaaatgttttcattctatcaagtattaagcaggtg----agtctagattggaagaaagaatggatgtgttcaagg |
31901315 |
T |
|
| Q |
184 |
agtggacatctagatgaccatggaaagagaggaaaagaacaaaggagtgtggcactccacaagtggtgtcta |
255 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31901316 |
agtggacatctagaagaccatggaaagagaggaaaagaacaaagaagtgtggcactccacaagtggtgtcta |
31901387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 292 - 449
Target Start/End: Original strand, 31901517 - 31901670
Alignment:
| Q |
292 |
ctttactttgaattcatcttgcatagttttttgctttcgttcacacttaaaatttt-atcatctgtttctgttgggatttgattcaggtccttgtggatg |
390 |
Q |
| |
|
||||| |||||||||||| ||||||||| ||||||| || || ||||||||||| ||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
31901517 |
ctttattttgaattcatcatgcatagttgtttgcttagttttacccttaaaattttgatcatatgtt------gggatttgattcaggtccttgtggatg |
31901610 |
T |
|
| Q |
391 |
cataatgcactcatgatggttcagttaaacatattcagaag-ttcaacattggggctgga |
449 |
Q |
| |
|
|| |||||||||||||||| ||| ||||||||||||||||| || |||| |||||||||| |
|
|
| T |
31901611 |
cagaatgcactcatgatggctcaattaaacatattcagaagtttgaacaatggggctgga |
31901670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University