View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_152 (Length: 265)
Name: NF1715_low_152
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_152 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 231
Target Start/End: Original strand, 2547454 - 2547676
Alignment:
| Q |
7 |
gcatcaacacaattatagcttgagaaaaaacttagtttacaaagatagatagatagtaaagggaagatagtgatagagactacaaaatatatagtgagaa |
106 |
Q |
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| T |
2547454 |
gcatcaacacaattatagcttgagaaaaaacttagtttacaaagatagatagatagtaaagggaagatagtgataga--ctacaaaatatatagttagaa |
2547551 |
T |
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| Q |
107 |
tatggtcaataatttataggagtgaaatggttgatttatttcttttagcttaactcaattaatttaagcaggaaaagtttttagcaataatagaaaaatc |
206 |
Q |
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| T |
2547552 |
tatggtcaataatttataggagtgaaatggttgatttatttctttaagcttaactcaattaatttaagcaggaaaagtttttagcaataatagaaaaatc |
2547651 |
T |
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| Q |
207 |
tgacttttcattcaatcaatttaat |
231 |
Q |
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| T |
2547652 |
taacttttcattcaatcaatttaat |
2547676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 62
Target Start/End: Original strand, 51447925 - 51447953
Alignment:
| Q |
34 |
aaacttagtttacaaagatagatagatag |
62 |
Q |
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| T |
51447925 |
aaacttagtttacaaagatagatagatag |
51447953 |
T |
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