View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1715_low_157 (Length: 261)

Name: NF1715_low_157
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1715_low_157
NF1715_low_157
[»] chr5 (14 HSPs)
chr5 (114-168)||(11354271-11354325)
chr5 (114-168)||(11373068-11373122)
chr5 (110-181)||(2904774-2904845)
chr5 (226-261)||(8529139-8529174)
chr5 (224-261)||(8535697-8535734)
chr5 (109-181)||(9074493-9074565)
chr5 (110-181)||(2844831-2844902)
chr5 (110-181)||(2856658-2856729)
chr5 (110-181)||(2874268-2874339)
chr5 (15-65)||(8641772-8641822)
chr5 (228-261)||(1600177-1600210)
chr5 (111-172)||(8644485-8644546)
chr5 (109-181)||(8529204-8529276)
chr5 (109-181)||(8641647-8641719)
[»] chr6 (1 HSPs)
chr6 (224-261)||(16716542-16716579)
[»] chr4 (2 HSPs)
chr4 (109-181)||(9443365-9443437)
chr4 (226-261)||(9443300-9443335)
[»] chr1 (2 HSPs)
chr1 (111-181)||(5131034-5131104)
chr1 (17-64)||(5131160-5131207)
[»] scaffold0627 (1 HSPs)
scaffold0627 (224-261)||(4843-4880)
[»] chr7 (3 HSPs)
chr7 (224-261)||(48361725-48361762)
chr7 (109-181)||(48361619-48361691)
chr7 (226-261)||(35780024-35780059)


Alignment Details
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 168
Target Start/End: Original strand, 11354271 - 11354325
Alignment:
Q  114 ggtcaatattgtgtttcagccttgaaagtgagaagtttcaattattcccttctcc 168  Q
    |||||||||||||||||| | |||||||||||||||||||||  |||||||||||    
T  11354271 ggtcaatattgtgtttcaactttgaaagtgagaagtttcaatccttcccttctcc 11354325  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 168
Target Start/End: Complemental strand, 11373122 - 11373068
Alignment:
Q  114 ggtcaatattgtgtttcagccttgaaagtgagaagtttcaattattcccttctcc 168  Q
    |||||||||||||||||| | |||||||||||||||||||||  |||||||||||    
T  11373122 ggtcaatattgtgtttcaactttgaaagtgagaagtttcaatccttcccttctcc 11373068  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 181
Target Start/End: Original strand, 2904774 - 2904845
Alignment:
Q  110 caaaggtcaatattgtgtttcagccttgaaagtgagaagtttcaattattcccttctcctccacatgtgttt 181  Q
    |||| ||||||||||||||||||  |||||||||||| | | |||| ||| ||||||||||||||| |||||    
T  2904774 caaaagtcaatattgtgtttcagttttgaaagtgagaggatgcaatcatttccttctcctccacatatgttt 2904845  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 226 - 261
Target Start/End: Complemental strand, 8529174 - 8529139
Alignment:
Q  226 tattagcatgggagaattaaagggatttctatacat 261  Q
    ||||||||||||||||||||||||||||||||||||    
T  8529174 tattagcatgggagaattaaagggatttctatacat 8529139  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 261
Target Start/End: Complemental strand, 8535734 - 8535697
Alignment:
Q  224 catattagcatgggagaattaaagggatttctatacat 261  Q
    |||||||||||||||||||||||||||||||| |||||    
T  8535734 catattagcatgggagaattaaagggatttctttacat 8535697  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 181
Target Start/End: Original strand, 9074493 - 9074565
Alignment:
Q  109 gcaaaggtcaatattgtgtttcagccttgaaagtgagaagtttcaattattcccttctcctccacatgtgttt 181  Q
    ||||||||||||||||| |||| |  |||||||||||| ||| || | ||| ||||||||||| |||||||||    
T  9074493 gcaaaggtcaatattgtttttctgttttgaaagtgagaggttgcagtcatttccttctcctccgcatgtgttt 9074565  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 181
Target Start/End: Original strand, 2844831 - 2844902
Alignment:
Q  110 caaaggtcaatattgtgtttcagccttgaaagtgagaagtttcaattattcccttctcctccacatgtgttt 181  Q
    |||| |||||||||||||||||   |||||||||||| ||| || |  || |||||||||||||||||||||    
T  2844831 caaaagtcaatattgtgtttcaattttgaaagtgagaggttgcagtcgtttccttctcctccacatgtgttt 2844902  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 181
Target Start/End: Original strand, 2856658 - 2856729
Alignment:
Q  110 caaaggtcaatattgtgtttcagccttgaaagtgagaagtttcaattattcccttctcctccacatgtgttt 181  Q
    |||| |||||||||||||||||   |||||||||||| ||| || |  || |||||||||||||||||||||    
T  2856658 caaaagtcaatattgtgtttcaattttgaaagtgagaggttgcagtcgtttccttctcctccacatgtgttt 2856729  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 181
Target Start/End: Original strand, 2874268 - 2874339
Alignment:
Q  110 caaaggtcaatattgtgtttcagccttgaaagtgagaagtttcaattattcccttctcctccacatgtgttt 181  Q
    |||| |||||||||||||||||   |||||||||||| ||| || |  || |||||||||||||||||||||    
T  2874268 caaaagtcaatattgtgtttcaattttgaaagtgagaggttgcagtcgtttccttctcctccacatgtgttt 2874339  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 8641822 - 8641772
Alignment:
Q  15 catcatggagaaatattgaagtggataatcagatttgtatttcgaggctta 65  Q
    |||||||||||||| |||||||||||  |||||||| ||||||||| ||||    
T  8641822 catcatggagaaatgttgaagtggatcctcagatttctatttcgagtctta 8641772  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 261
Target Start/End: Original strand, 1600177 - 1600210
Alignment:
Q  228 ttagcatgggagaattaaagggatttctatacat 261  Q
    |||||||||||||||||||||||||||| |||||    
T  1600177 ttagcatgggagaattaaagggatttctttacat 1600210  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 172
Target Start/End: Complemental strand, 8644546 - 8644485
Alignment:
Q  111 aaaggtcaatattgtgtttcagccttgaaagtgagaagtttcaattattcccttctcctcca 172  Q
    ||||||| |||||||||||| |  |||||||||||| ||| |||| ||| ||||||||||||    
T  8644546 aaaggtctatattgtgtttctgttttgaaagtgagaggttgcaatcatttccttctcctcca 8644485  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 8529276 - 8529204
Alignment:
Q  109 gcaaaggtcaatattgtgtttcagccttgaaagtgagaagtttcaattattcccttctcctccacatgtgttt 181  Q
    ||||||||||||||||  |||| || |||||| ||||| ||| || |  || |||||||||||||||||||||    
T  8529276 gcaaaggtcaatattggttttctgctttgaaaatgagaggttgcagtcgtttccttctcctccacatgtgttt 8529204  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 8641719 - 8641647
Alignment:
Q  109 gcaaaggtcaatattgtgtttcagccttgaaagtgagaagtttcaattattcccttctcctccacatgtgttt 181  Q
    ||||||||||||||| |||||| |  | ||||||||||  ||  | ||||| |||||||||||||||||||||    
T  8641719 gcaaaggtcaatattatgtttctgtttggaaagtgagagattgaagttatttccttctcctccacatgtgttt 8641647  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 224 - 261
Target Start/End: Complemental strand, 16716579 - 16716542
Alignment:
Q  224 catattagcatgggagaattaaagggatttctatacat 261  Q
    ||||||||||||||||||||||||||||||||||||||    
T  16716579 catattagcatgggagaattaaagggatttctatacat 16716542  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 9443437 - 9443365
Alignment:
Q  109 gcaaaggtcaatattgtgtttcagccttgaaagtgagaagtttcaattattcccttctcctccacatgtgttt 181  Q
    ||||||||||||||||  |||| || |||||||||||| ||| || | ||| |||||||||||||||||||||    
T  9443437 gcaaaggtcaatattggttttctgctttgaaagtgagaggttgcagtcatttccttctcctccacatgtgttt 9443365  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 226 - 261
Target Start/End: Complemental strand, 9443335 - 9443300
Alignment:
Q  226 tattagcatgggagaattaaagggatttctatacat 261  Q
    ||||||||||||||||||||||||||||||||||||    
T  9443335 tattagcatgggagaattaaagggatttctatacat 9443300  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 111 - 181
Target Start/End: Complemental strand, 5131104 - 5131034
Alignment:
Q  111 aaaggtcaatattgtgtttcagccttgaaagtgagaagtttcaattattcccttctcctccacatgtgttt 181  Q
    |||||||| | |||||||||||  ||||||||||||  || |||| |||||||||||||||||| ||||||    
T  5131104 aaaggtcattgttgtgtttcagttttgaaagtgagagattgcaatcattcccttctcctccacacgtgttt 5131034  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 5131207 - 5131160
Alignment:
Q  17 tcatggagaaatattgaagtggataatcagatttgtatttcgaggctt 64  Q
    |||||||||||| |||||||||||  |||||||| |||||||||||||    
T  5131207 tcatggagaaatgttgaagtggatcttcagatttctatttcgaggctt 5131160  T

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Target: scaffold0627 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 261
Target Start/End: Complemental strand, 4880 - 4843
Alignment:
Q  224 catattagcatgggagaattaaagggatttctatacat 261  Q
    |||||||||||||||||||||||||||||||| |||||    
T  4880 catattagcatgggagaattaaagggatttctttacat 4843  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 261
Target Start/End: Original strand, 48361725 - 48361762
Alignment:
Q  224 catattagcatgggagaattaaagggatttctatacat 261  Q
    |||||||||||||||||||||||||||||||| |||||    
T  48361725 catattagcatgggagaattaaagggatttctttacat 48361762  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 181
Target Start/End: Original strand, 48361619 - 48361691
Alignment:
Q  109 gcaaaggtcaatattgtgtttcagccttgaaagtgagaagtttcaattattcccttctcctccacatgtgttt 181  Q
    ||||||||||||||||| |||| |  |||||||||||| | | || | ||| |||||||||||||||||||||    
T  48361619 gcaaaggtcaatattgtttttctgttttgaaagtgagagggtgcagtcatttccttctcctccacatgtgttt 48361691  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 261
Target Start/End: Complemental strand, 35780059 - 35780024
Alignment:
Q  226 tattagcatgggagaattaaagggatttctatacat 261  Q
    |||||||||||||||||||||||||||||| |||||    
T  35780059 tattagcatgggagaattaaagggatttctttacat 35780024  T

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