View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1715_low_159 (Length: 258)

Name: NF1715_low_159
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1715_low_159
NF1715_low_159
[»] chr4 (3 HSPs)
chr4 (40-242)||(11797461-11797663)
chr4 (42-100)||(24613676-24613734)
chr4 (53-100)||(30982853-30982900)
[»] chr6 (9 HSPs)
chr6 (42-100)||(16766723-16766781)
chr6 (42-101)||(4118307-4118366)
chr6 (42-85)||(9522917-9522960)
chr6 (42-100)||(17302583-17302641)
chr6 (42-100)||(25038046-25038104)
chr6 (40-85)||(785445-785490)
chr6 (53-94)||(9107351-9107392)
chr6 (42-91)||(21395292-21395341)
chr6 (53-117)||(8365477-8365541)
[»] scaffold0008 (1 HSPs)
scaffold0008 (42-117)||(263330-263405)
[»] chr7 (6 HSPs)
chr7 (42-117)||(6028651-6028726)
chr7 (42-91)||(9408318-9408367)
chr7 (42-98)||(24339668-24339724)
chr7 (42-96)||(7438732-7438786)
chr7 (42-100)||(26033436-26033494)
chr7 (42-96)||(43243103-43243157)
[»] chr1 (5 HSPs)
chr1 (42-117)||(32461422-32461496)
chr1 (42-80)||(26526751-26526789)
chr1 (42-96)||(31694689-31694743)
chr1 (42-96)||(47989523-47989577)
chr1 (42-98)||(18556433-18556489)
[»] chr8 (2 HSPs)
chr8 (42-100)||(2572031-2572089)
chr8 (42-100)||(22652002-22652060)
[»] chr5 (5 HSPs)
chr5 (42-100)||(21542056-21542114)
chr5 (42-116)||(12641700-12641774)
chr5 (42-100)||(18592099-18592157)
chr5 (42-100)||(21522776-21522834)
chr5 (42-100)||(21533342-21533400)
[»] chr3 (6 HSPs)
chr3 (44-100)||(17005594-17005650)
chr3 (42-117)||(55212989-55213063)
chr3 (42-100)||(14209139-14209197)
chr3 (42-91)||(1509565-1509614)
chr3 (44-100)||(15796269-15796325)
chr3 (53-117)||(41961608-41961672)
[»] scaffold0086 (1 HSPs)
scaffold0086 (42-101)||(2954-3013)
[»] chr2 (4 HSPs)
chr2 (44-91)||(4882680-4882727)
chr2 (42-101)||(30717504-30717563)
chr2 (42-100)||(28524452-28524510)
chr2 (50-100)||(34337156-34337206)


Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 40 - 242
Target Start/End: Complemental strand, 11797663 - 11797461
Alignment:
Q  40 tgacataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgttggatactgagacacgctttcgatcagaagtgtcagtgc 139  Q
    ||||||||||||||||||| |||||||||| |||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  11797663 tgacataatttaatgtaatcacaagtgtcggtgttgtgtcgttgtcagacataacacgtgttggatactgggacacgctttcgatcagaagtgtcagtgc 11797564  T
Q  140 aacaaagttctatgttattaaagtagtccgttaaaactgaactacgttaatgcaagagaatagcttcatttggaagaacaagcttcatgatatgcaagtt 239  Q
    |||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11797563 aacaaagttctatgttgttaaagtaatccgttaaaattgaactacgttaatgcaagagaatagcttcatttggaagaacaagcttcatgatatgcaagtt 11797464  T
Q  240 ttg 242  Q
    |||    
T  11797463 ttg 11797461  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 100
Target Start/End: Complemental strand, 24613734 - 24613676
Alignment:
Q  42 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 100  Q
    |||||||| ||||||| ||||||||||| |||  |||||||||||||||| ||||||||    
T  24613734 acataattcaatgtaagtacaagtgtcggtgtcatgtcggtgtcagacacgacacgtgt 24613676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 100
Target Start/End: Complemental strand, 30982900 - 30982853
Alignment:
Q  53 tgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 100  Q
    |||||||| |||||||| ||| ||||||||||||||||| ||||||||    
T  30982900 tgtaattataagtgtcggtgtcgtgtcggtgtcagacacgacacgtgt 30982853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 100
Target Start/End: Original strand, 16766723 - 16766781
Alignment:
Q  42 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 100  Q
    |||||||| | ||||||||||||||||| ||| ||||||||||| ||||||||||||||    
T  16766723 acataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacaacacgtgt 16766781  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 101
Target Start/End: Complemental strand, 4118366 - 4118307
Alignment:
Q  42 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgtt 101  Q
    |||||||| ||||||||||||||||| | | ||||||| ||||| ||||||| |||||||    
T  4118366 acataattaaatgtaattacaagtgttggttttgtgtcagtgtcggacacaatacgtgtt 4118307  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 9522917 - 9522960
Alignment:
Q  42 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtc 85  Q
    |||||||| | ||||||||||||||||| |||||||||||||||    
T  9522917 acataattcagtgtaattacaagtgtcggtgttgtgtcggtgtc 9522960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 100
Target Start/End: Original strand, 17302583 - 17302641
Alignment:
Q  42 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 100  Q
    |||||||| ||||||||||||||||||  ||| ||||| || | |||||||||||||||    
T  17302583 acataattcaatgtaattacaagtgtcattgtcgtgtcagtattagacacaacacgtgt 17302641  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 100
Target Start/End: Complemental strand, 25038104 - 25038046
Alignment:
Q  42 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 100  Q
    |||||||||| ||||||||||| ||||| | |||||| |||||| ||||| ||||||||    
T  25038104 acataatttagtgtaattacaaatgtcggtattgtgttggtgtccgacacgacacgtgt 25038046  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 85
Target Start/End: Complemental strand, 785490 - 785445
Alignment:
Q  40 tgacataatttaatgtaattacaagtgtcgctgttgtgtcggtgtc 85  Q
    |||||||||| |||||||| |||||||||| ||| |||||||||||    
T  785490 tgacataattcaatgtaatcacaagtgtcggtgtcgtgtcggtgtc 785445  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 94
Target Start/End: Complemental strand, 9107392 - 9107351
Alignment:
Q  53 tgtaattacaagtgtcgctgttgtgtcggtgtcagacacaac 94  Q
    ||||||||||||||||| ||| ||||||||||| ||||||||    
T  9107392 tgtaattacaagtgtcggtgtcgtgtcggtgtcggacacaac 9107351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 21395341 - 21395292
Alignment:
Q  42 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacac 91  Q
    |||||||||| ||||||||||||||||| ||| ||||| ||||| |||||    
T  21395341 acataatttagtgtaattacaagtgtcggtgtcgtgtcagtgtcggacac 21395292  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 117
Target Start/End: Complemental strand, 8365541 - 8365477
Alignment:
Q  53 tgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgttggatactgagacacgc 117  Q
    ||||||||||||||||| ||| |||||||| || ||||| ||||||||  || |||| |||||||    
T  8365541 tgtaattacaagtgtcggtgtcgtgtcggtatcggacacgacacgtgtccgacactgggacacgc 8365477  T

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Target: scaffold0008 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 117
Target Start/End: Complemental strand, 263405 - 263330
Alignment:
Q  42 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgttggatactgagacacgc 117  Q
    |||||||| | |||||||| |||||||  ||| ||||||||||||||||| ||||||||| |||||  ||||||||    
T  263405 acataattcagtgtaattataagtgtcagtgtcgtgtcggtgtcagacacgacacgtgttcgataccaagacacgc 263330  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 117
Target Start/End: Original strand, 6028651 - 6028726
Alignment:
Q  42 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgttggatactgagacacgc 117  Q
    |||||||||||||||||||||| ||||| ||| ||||| |||||  |||| ||||| ||| || ||||||||||||    
T  6028651 acataatttaatgtaattacaaatgtcggtgtcgtgtcagtgtcgaacacgacacgagttcgacactgagacacgc 6028726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 9408367 - 9408318
Alignment:
Q  42 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacac 91  Q
    |||||||||| ||||||||||||||||| ||| || ||||||||||||||    
T  9408367 acataatttagtgtaattacaagtgtcggtgtcgtatcggtgtcagacac 9408318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 24339668 - 24339724
Alignment:
Q  42 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgt 98  Q
    |||||||| | ||||||||||||||||| ||| ||||||||||| ||||| ||||||    
T  24339668 acataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgacacgt 24339724  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 7438732 - 7438786
Alignment:
Q  42 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacac 96  Q
    |||||||| ||||||||||||||||||| |||  ||||||||||| |||| ||||    
T  7438732 acataattcaatgtaattacaagtgtcggtgtcatgtcggtgtcaaacacgacac 7438786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 100
Target Start/End: Complemental strand, 26033494 - 26033436
Alignment:
Q  42 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 100  Q
    |||||||| | ||||||||||||||||| | | ||||||||||||||||  ||||||||    
T  26033494 acataattcagtgtaattacaagtgtcggtctcgtgtcggtgtcagacatgacacgtgt 26033436  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 43243103 - 43243157
Alignment:
Q  42 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacac 96  Q
    |||||||||||||||||||||||||||| ||| ||||  |||||  |||||||||    
T  43243103 acataatttaatgtaattacaagtgtcgatgtcgtgtttgtgtcgaacacaacac 43243157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 117
Target Start/End: Complemental strand, 32461496 - 32461422
Alignment:
Q  42 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgttggatactgagacacgc 117  Q
    |||||||||||||||||||||||||| | || |||||||||||| ||||| ||||||||  || |||| |||||||    
T  32461496 acataatttaatgtaattacaagtgttggtg-tgtgtcggtgtcggacacgacacgtgtctgacactgggacacgc 32461422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 26526789 - 26526751
Alignment:
Q  42 acataatttaatgtaattacaagtgtcgctgttgtgtcg 80  Q
    |||||||||||| ||||||||||||||| ||||||||||    
T  26526789 acataatttaatataattacaagtgtcggtgttgtgtcg 26526751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 31694743 - 31694689
Alignment:
Q  42 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacac 96  Q
    |||||||| | | ||||||||||||||| ||| ||||||||||| ||||||||||    
T  31694743 acataattcagtataattacaagtgtcggtgtcgtgtcggtgtcggacacaacac 31694689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 47989523 - 47989577
Alignment:
Q  42 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacac 96  Q
    |||||||| | ||||||||||||||||| ||| ||||||||||| ||||| ||||    
T  47989523 acataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgacac 47989577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 18556489 - 18556433
Alignment:
Q  42 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgt 98  Q
    |||||||||||||||||||||||| | | ||| ||| ||||||||||| | ||||||    
T  18556489 acataatttaatgtaattacaagtattggtgtcgtgacggtgtcagacccgacacgt 18556433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 100
Target Start/End: Complemental strand, 2572089 - 2572031
Alignment:
Q  42 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 100  Q
    |||||||||| ||||||||||||||||| ||| ||||| ||||| ||||| ||||||||    
T  2572089 acataatttagtgtaattacaagtgtcggtgtcgtgtctgtgtcggacacgacacgtgt 2572031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 100
Target Start/End: Original strand, 22652002 - 22652060
Alignment:
Q  42 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 100  Q
    |||||||| ||| ||||||||||||||| ||| ||||||||||| ||||| ||| ||||    
T  22652002 acataattcaatataattacaagtgtcggtgtcgtgtcggtgtcggacacgacatgtgt 22652060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 100
Target Start/End: Original strand, 21542056 - 21542114
Alignment:
Q  42 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 100  Q
    |||||||| | ||||||||||||||||| ||| ||||||||||| ||||| ||||||||    
T  21542056 acataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgacacgtgt 21542114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 116
Target Start/End: Original strand, 12641700 - 12641774
Alignment:
Q  42 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgttggatactgagacacg 116  Q
    |||||||||| | ||||| || |||||  ||| |||| |||||||||||||||||||||| || || ||||||||    
T  12641700 acataatttagtataattgcacgtgtcagtgtcgtgttggtgtcagacacaacacgtgttcgacacggagacacg 12641774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 100
Target Start/End: Original strand, 18592099 - 18592157
Alignment:
Q  42 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 100  Q
    |||||||| |||||||||| | ||| || ||| ||||||||||| ||||||||||||||    
T  18592099 acataattcaatgtaattatatgtgccggtgtcgtgtcggtgtcggacacaacacgtgt 18592157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 100
Target Start/End: Original strand, 21522776 - 21522834
Alignment:
Q  42 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 100  Q
    |||||||| | ||||||||||| ||||| ||| ||||||||||| ||||| ||||||||    
T  21522776 acataattcagtgtaattacaattgtcggtgtcgtgtcggtgtcggacacgacacgtgt 21522834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 100
Target Start/End: Original strand, 21533342 - 21533400
Alignment:
Q  42 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 100  Q
    |||||||| | ||||||||||| ||||| ||| ||||||||||| ||||| ||||||||    
T  21533342 acataattcagtgtaattacaattgtcggtgtcgtgtcggtgtcggacacgacacgtgt 21533400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 17005650 - 17005594
Alignment:
Q  44 ataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 100  Q
    |||||| | |||||||| |||||||| |||||||| ||||||||||| |||||||||    
T  17005650 ataattcagtgtaattataagtgtcggtgttgtgttggtgtcagacataacacgtgt 17005594  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 117
Target Start/End: Original strand, 55212989 - 55213063
Alignment:
Q  42 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgttggatactgagacacgc 117  Q
    |||||||||| || |||||||||||||| || |||||||||||| | ||||||||||||  || || |||||||||    
T  55212989 acataatttagtgcaattacaagtgtcggtg-tgtgtcggtgtcgggcacaacacgtgtccgacaccgagacacgc 55213063  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 100
Target Start/End: Original strand, 14209139 - 14209197
Alignment:
Q  42 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 100  Q
    |||||||| | ||||||||||||||||  ||| ||||||||||| ||||| ||||||||    
T  14209139 acataattcagtgtaattacaagtgtcagtgtcgtgtcggtgtcggacacgacacgtgt 14209197  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 1509565 - 1509614
Alignment:
Q  42 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacac 91  Q
    |||||||||| ||||||||||||||||| ||| || |||||||| |||||    
T  1509565 acataatttagtgtaattacaagtgtcggtgtcgtttcggtgtccgacac 1509614  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 15796325 - 15796269
Alignment:
Q  44 ataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 100  Q
    |||||| | ||||||||||| ||||| ||| |||| |||||| ||||||||||||||    
T  15796325 ataattcagtgtaattacaattgtcggtgtcgtgtaggtgtcggacacaacacgtgt 15796269  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 117
Target Start/End: Complemental strand, 41961672 - 41961608
Alignment:
Q  53 tgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgttggatactgagacacgc 117  Q
    ||||||||||||||||| ||| |||||||| || ||||| ||||||||  || |||| |||||||    
T  41961672 tgtaattacaagtgtcggtgtcgtgtcggtatcggacacgacacgtgtccgacactgggacacgc 41961608  T

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Target: scaffold0086 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 2954 - 3013
Alignment:
Q  42 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgtt 101  Q
    |||||||||| ||||||||||||| ||  ||| |||||||| |||||||| |||||||||    
T  2954 acataatttagtgtaattacaagtatcagtgtcgtgtcggtatcagacacgacacgtgtt 3013  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 4882727 - 4882680
Alignment:
Q  44 ataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacac 91  Q
    |||||| | ||||||||||||||||| ||| |||||||||||||||||    
T  4882727 ataattcagtgtaattacaagtgtcgatgtcgtgtcggtgtcagacac 4882680  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 101
Target Start/End: Complemental strand, 30717563 - 30717504
Alignment:
Q  42 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgtt 101  Q
    |||||||| | ||||||||||||||||| ||| |||||| |||| ||||| |||||||||    
T  30717563 acataattcagtgtaattacaagtgtcgatgtcgtgtcgttgtcggacacgacacgtgtt 30717504  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 100
Target Start/End: Original strand, 28524452 - 28524510
Alignment:
Q  42 acataatttaatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 100  Q
    |||||||| | |||||||| | |||||| |||||||| |||||| ||||||||||||||    
T  28524452 acataattcagtgtaattatatgtgtcgttgttgtgttggtgtcggacacaacacgtgt 28524510  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 34337206 - 34337156
Alignment:
Q  50 taatgtaattacaagtgtcgctgttgtgtcggtgtcagacacaacacgtgt 100  Q
    |||| ||||||||||||||| |||  |||||||||| ||||||||||||||    
T  34337206 taatttaattacaagtgtcggtgtcctgtcggtgtcggacacaacacgtgt 34337156  T

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