View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1715_low_16 (Length: 572)

Name: NF1715_low_16
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1715_low_16
NF1715_low_16
[»] chr8 (10 HSPs)
chr8 (1-572)||(36201764-36202341)
chr8 (34-566)||(36214268-36214793)
chr8 (33-173)||(36198800-36198939)
chr8 (158-300)||(36198643-36198788)
chr8 (479-541)||(36211998-36212060)
chr8 (479-541)||(36190562-36190624)
chr8 (482-555)||(36188076-36188149)
chr8 (479-555)||(36209520-36209596)
chr8 (479-541)||(36197985-36198047)
chr8 (479-572)||(36196380-36196473)


Alignment Details
Target: chr8 (Bit Score: 543; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 1 - 572
Target Start/End: Complemental strand, 36202341 - 36201764
Alignment:
Q  1 aatctgaagtcgaaacatgaacatagtttggactttggaaaacatcaccttggagagattagagattgacaagggcttggtacggtatagatgaattaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36202341 aatctgaagtcgaaacatgaacatagtttggactttggaaaacatcaccttggagagattagagattgacaagggcttggtacggtatagatgaattaag 36202242  T
Q  101 actttgttttttctatcagttgcttgtgcttgtaattctaagatatgactgattcagataataataataataactgtcataatgtgatgtgtggtaattg 200  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36202241 actttgttttttctattagttgcctgtgcttgtaattctaagatatgactgattcagataataataataataactgtcataatgtgatgtgtggtaattg 36202142  T
Q  201 ttctgtctaattttatcttgtttttaccatatgggcagctaagtgctatagcatattgtgttcaaagaccaagttccattttcctccatttatgtgatct 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  36202141 ttctgtctaattttatcttgtttttaccatatgggcagctaagtgctatagcgtattgtgttcaaagaccaagttccattttcctccatttatgtgatct 36202042  T
Q  301 agtttggggctgtctgaagtagtgataatatactacggggtat------ctttgcggccaacaaacatggctcttaaataatttttgaagggtgaagagg 394  Q
    |||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36202041 agtttggggctgtctgaagtagtgataatatactacggggtatattttactttgcggccaacaaacatggctcttaaataatttttgaagggtgaagagg 36201942  T
Q  395 tgggtgtacttaagcactcaactacttagattttggtcatctggacaatgggccttgctgaatctgtaatgttgtagtagctcctttattttcaaagttt 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36201941 tgggtgtacttaagcactcaactacttagattttggtcatctggacaatgggccttgctgaatctgtaatgttgtagtagctcctttattttcaaagttt 36201842  T
Q  495 catttagaattttggataatgattttgagtgcaaggctatgttttaaccagataaataattttgtaattgtataggct 572  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36201841 catttagaattttggataatgattttgagtgcaaggctatgttttaaccagataaataattttgtaattgtataggct 36201764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 34 - 566
Target Start/End: Complemental strand, 36214793 - 36214268
Alignment:
Q  34 tttggaaaacatcaccttggagagattagagattgacaagggcttggtacggtatagatgaattaagactttgttttttctatcagttgcttgtgcttgt 133  Q
    |||||||||||  |  |||| ||||||||||||||||||| |||| ||  ||||||||| ||||||||||||| || |||  |||||||| |||||||||    
T  36214793 tttggaaaacacaatgttggggagattagagattgacaagtgctttgt-tggtatagatcaattaagactttgcttattcggtcagttgcatgtgcttgt 36214695  T
Q  134 aattctaagatatgactgattcagataataataataataactgtcataatgtgatgtgtggtaattgttctgtctaattttatcttgtttttaccatatg 233  Q
    |||| |||||||||||   || ||      ||||||||||||||||| ||||| | | | ||  |  || || ||||||||| |||| ||||| ||||||    
T  36214694 aattttaagatatgaccagtttag------ataataataactgtcatgatgtgttttatagtgttccttgtgcctaattttagcttggttttagcatatg 36214601  T
Q  234 ggcagctaagt-----gctatagcatat--tgtgttcaaagaccaagttccattttcctccatttatgtgatctagtttggggctgtctgaagtagtgat 326  Q
    || ||||| ||     |||||| | |||  || | ||||||||  ||||||| |||||||||||||||||||| ||||||||||  | ||||| |||  |    
T  36214600 ggtagctaggtaggtggctataccgtattatgagctcaaagactgagttcca-tttcctccatttatgtgatcaagtttggggcattttgaaggagtagt 36214502  T
Q  327 aatatactacggggtat------ctttgcggccaacaaacatggctcttaaataatttttgaagggtgaagaggtgggtgtacttaagcactcaactact 420  Q
    | ||||| |||||||||      ||||| |||||||||  || ||||||||||||||||||||||||||| |||||| ||||||| |||||| |||| |     
T  36214501 attataccacggggtatatttgactttgtggccaacaa--atcgctcttaaataatttttgaagggtgaataggtggttgtacttcagcacttaactcca 36214404  T
Q  421 tagattttggtcatctggacaatgggccttgctgaa-tctgtaatgttgtagtagctcctttattttcaaagtttcatttagaattttggataatgattt 519  Q
    |||||||||||||| | |||||| ||||||||| ||  || ||||||         |||  |||||  ||||||||||||||||||||||||| ||||||    
T  36214403 tagattttggtcattttgacaattggccttgcttaacgctctaatgt---------tcc--tatttgaaaagtttcatttagaattttggatactgattt 36214315  T
Q  520 tgagtgcaaggctatgttttaaccagataaataattttgtaattgta 566  Q
     ||||| ||| ||||||||| ||| ||||||||||| ||||||||||    
T  36214314 ggagtgtaagtctatgttttgacctgataaataattatgtaattgta 36214268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 33 - 173
Target Start/End: Complemental strand, 36198939 - 36198800
Alignment:
Q  33 ctttggaaaacatcaccttggagagattagagattgacaagggcttggtacggtatagatgaattaagactttgttttttctatcagttgcttgtgcttg 132  Q
    ||||||||||||  |  |||||||||||||||||||  ||| ||||  || |||||||||||||| | |||||| |||||   |||||||||||||||||    
T  36198939 ctttggaaaacacaatgttggagagattagagattggtaagtgcttttta-ggtatagatgaatttacactttgcttttttggtcagttgcttgtgcttg 36198841  T
Q  133 taattctaagatatgactgattcagataataataataataa 173  Q
    ||||| |||||||||||   |||||| ||||||||||||||    
T  36198840 taattttaagatatgaccagttcagagaataataataataa 36198800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 158 - 300
Target Start/End: Complemental strand, 36198788 - 36198643
Alignment:
Q  158 ataataataataataactgtcataatgtgatgtgtggtaattgttctgtctaattttatcttgtttttaccatatgggcagctaagtg-ctatagcatat 256  Q
    ||||||||||||||||||||||  ||||| ||| | ||  |  || |||| ||||||| |||| |||||||||||||| ||||| ||| || |||  |||    
T  36198788 ataataataataataactgtcaagatgtgttgtctagtgttccttttgtcaaattttaacttgcttttaccatatgggtagctaggtggctgtagtgtat 36198689  T
Q  257 tgtg--ttcaaagaccaagttccattttcctccatttatgtgatct 300  Q
    | ||  |||||||||  |||||||||||||||||||||||||||||    
T  36198688 tatgagttcaaagactgagttccattttcctccatttatgtgatct 36198643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 479 - 541
Target Start/End: Complemental strand, 36212060 - 36211998
Alignment:
Q  479 tttattttcaaagtttcatttagaattttggataatgattttgagtgcaaggctatgttttaa 541  Q
    |||||||||||||||| ||||||||||||||||| |||| | ||||| |||||||||||||||    
T  36212060 tttattttcaaagtttaatttagaattttggatattgatctagagtgtaaggctatgttttaa 36211998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 479 - 541
Target Start/End: Complemental strand, 36190624 - 36190562
Alignment:
Q  479 tttattttcaaagtttcatttagaattttggataatgattttgagtgcaaggctatgttttaa 541  Q
    |||||||||||||||| ||||| ||||||||||| |||| | ||||| |||||||||||||||    
T  36190624 tttattttcaaagtttaatttaaaattttggatattgatctagagtgtaaggctatgttttaa 36190562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 482 - 555
Target Start/End: Complemental strand, 36188149 - 36188076
Alignment:
Q  482 attttcaaagtttcatttagaattttggataatgattttgagtgcaaggctatgttttaaccagataaataatt 555  Q
    ||||||||||||| ||||||||||||| ||| | | || ||||||||||||||| ||| ||| |||||||||||    
T  36188149 attttcaaagtttaatttagaattttgaatattaacttggagtgcaaggctatggtttgacctgataaataatt 36188076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 479 - 555
Target Start/End: Complemental strand, 36209596 - 36209520
Alignment:
Q  479 tttattttcaaagtttcatttagaattttggataatgattttgagtgcaaggctatgttttaaccagataaataatt 555  Q
    |||||||||||||||| ||||||| ||||| ||| | | || ||||||||||||||| ||| ||| |||||||||||    
T  36209596 tttattttcaaagtttaatttagatttttgaatattaacttggagtgcaaggctatgctttgacctgataaataatt 36209520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 479 - 541
Target Start/End: Complemental strand, 36198047 - 36197985
Alignment:
Q  479 tttattttcaaagtttcatttagaattttggataatgattttgagtgcaaggctatgttttaa 541  Q
    |||||||||||||||||||||| || |||||||| |||| | ||||  |||||||||||||||    
T  36198047 tttattttcaaagtttcatttataaatttggatattgatctggagtttaaggctatgttttaa 36197985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 479 - 572
Target Start/End: Complemental strand, 36196473 - 36196380
Alignment:
Q  479 tttattttcaaagtttcatttagaattttggataatgattttgagtgcaaggctatgttttaaccagataaataattttgtaattgtataggct 572  Q
    |||||||||||| ||| ||||||| ||||  ||| | | || ||||||||||||||| ||| ||| ||||||||||| | |||||||| |||||    
T  36196473 tttattttcaaattttaatttagattttttaatattaacttggagtgcaaggctatgctttgacctgataaataattgtataattgtaaaggct 36196380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University