View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_161 (Length: 256)
Name: NF1715_low_161
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_161 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 21210431 - 21210192
Alignment:
| Q |
1 |
acttcccccacttatataagcacatgtttaggcccgttctcatccaatgtgagacctcttaacacaccctctcacaaccagttttgaacatctggagcgt |
100 |
Q |
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| T |
21210431 |
acttcccccacttatataagcacatgtttaggcccgttctcatccaatgtgagacctcttaacacaccctctcacaaccagttttgaacatctggagcgt |
21210332 |
T |
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| Q |
101 |
gatccgttaacggtaacctaataggaggtggcccaccagatcttgaataggctttgatactagattaaaatttgagttcggcctaactcaaacctacaaa |
200 |
Q |
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| T |
21210331 |
gatccgttaatggtaacctaataggaggtggcccaccagatcttgaataggctttgatactagattaaaatttgagttgggcctaactcaaacctacaaa |
21210232 |
T |
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| Q |
201 |
accccggcttgtaaggtgagggtctccacttattaacacctg |
242 |
Q |
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| T |
21210231 |
a--ccagcttgtacggtgagggtctccacttattaacacctg |
21210192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 223
Target Start/End: Complemental strand, 43760566 - 43760461
Alignment:
| Q |
116 |
acctaataggaggtggcccaccagatcttgaataggctttgatactagattaaaatttgagttcggcctaactcaaacctacaaaaccccggcttgtaag |
215 |
Q |
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| T |
43760566 |
acctgatagcaggtggcccaacggatcttgaataatctttgatactatcttaaaatttgagctgggtcaaactcaaccatacaaaa--ccggcttgtaag |
43760469 |
T |
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| Q |
216 |
gtgagggt |
223 |
Q |
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| T |
43760468 |
atgagggt |
43760461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 30590583 - 30590510
Alignment:
| Q |
147 |
ataggctttgatactagattaaaatttgagttcggcctaactcaaacctacaaaaccccggcttgtaaggtgaggg |
222 |
Q |
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| T |
30590583 |
ataggctttgataccatattagaatttgggctaggcctaagtcaaccttacaaaa--ccggcttgtaaggtgaggg |
30590510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 203
Target Start/End: Original strand, 5308321 - 5308413
Alignment:
| Q |
111 |
cggtaacctaataggaggtggcccaccagatcttgaataggctttgatactagattaaaatttgagttcggcctaactcaaacctacaaaacc |
203 |
Q |
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| T |
5308321 |
cggtgaccttatagcagttggcccagcagatcttgtataggctttgatactatcttagaatttgggttgggtctaattaaaccttacaaaacc |
5308413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 43950182 - 43950249
Alignment:
| Q |
38 |
tctcatccaatgtgagacctcttaacacaccctctcacaaccagttttgaacatctggagcgtgatccg |
106 |
Q |
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| T |
43950182 |
tctcatccaatgtgggacc-ctaaacacaccctctcacacccaattctgaatatctagagtgtgatccg |
43950249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 220
Target Start/End: Original strand, 30029952 - 30030004
Alignment:
| Q |
165 |
ttaaaatttgagttcggcctaactcaaacctacaaaaccccggcttgtaaggtgag |
220 |
Q |
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|||||||||||||| |||||||||| ||||||||||| ||| ||||||||||||| |
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| T |
30029952 |
ttaaaatttgagttaggcctaactc-aacctacaaaa--ccgacttgtaaggtgag |
30030004 |
T |
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