View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_163 (Length: 254)
Name: NF1715_low_163
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_163 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 9 - 254
Target Start/End: Original strand, 43560742 - 43560987
Alignment:
| Q |
9 |
gagaagcaaaggtatgagttctaccctatattgtatctttttcgcgaataatgctaggagaaacaatattgaactctaaagaagccagtttggctctagc |
108 |
Q |
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| T |
43560742 |
gagaaacaaaggtatgagttctaccctatattgtatctttttcgcgaataatgctaggagaaacaatattgaactctaaagaagccagtttggctctagc |
43560841 |
T |
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| Q |
109 |
ctttagagcttctttcaagttcgagcgaacctccataagctcggcatcggtattggtaagctcgtttttcaattcttgtttatgcatggccaagtgctca |
208 |
Q |
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| T |
43560842 |
ctttagagcttctttcaagttcgagcgaacctccataagctcggcatcggtattggtaagctcgtttttcaattcttgtttatgcatggccaagtgctca |
43560941 |
T |
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| Q |
209 |
aggctctctctaaagacttgttcagatccctccacagaactgttcc |
254 |
Q |
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| T |
43560942 |
aggctctctctaaagacttgttcagatccctccacagaactgttcc |
43560987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 17730417 - 17730179
Alignment:
| Q |
10 |
agaagcaaaggtatgagttctaccctatattgtatctttttcgcgaataatgctaggagaaacaatattgaactctaaagaagccagtttggctctagcc |
109 |
Q |
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| T |
17730417 |
agaaacaaaggtataaattctaccctatattgtatctttttcgcgaataatggtaggagacaaaatattgaactctaaagaagccagtttggctctggcc |
17730318 |
T |
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| Q |
110 |
tttagagcttctttcaagttcgagcgaacctccataagctcggcatcggtattggtaagctcgtttttcaattcttgtttatgcatggccaagtgctcaa |
209 |
Q |
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| T |
17730317 |
tttagagcttccttcaagtttgagcgaacctccataagctcgtcatcgatatttgtaagctcgtttttcaattcttgtttatgcatggccatgtgatcaa |
17730218 |
T |
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| Q |
210 |
ggctctctctaaagacttgttcagatccctccacagaac |
248 |
Q |
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| T |
17730217 |
ggtgctctctaaagacttgttcagatccctccacagaac |
17730179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 10 - 151
Target Start/End: Original strand, 43570028 - 43570167
Alignment:
| Q |
10 |
agaagcaaaggtatgagttctaccctatattgtatctttttcgcgaataatgctaggagaaacaatattgaactctaaagaagccagtttggctctagcc |
109 |
Q |
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| T |
43570028 |
agaaacaaaggcataagttctaccctat--tgtatctttttcacgaataatgctaggagaaaaaatattgaactctaaagaagccagtttggctctggcc |
43570125 |
T |
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| Q |
110 |
tttagagcttctttcaagttcgagcgaacctccataagctcg |
151 |
Q |
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| T |
43570126 |
tttagagcatctttcaacttcgagcgaacctccataagctcg |
43570167 |
T |
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