View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_164 (Length: 251)
Name: NF1715_low_164
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_164 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 54265632 - 54265854
Alignment:
| Q |
16 |
ctcacaaatatagaaatggcagaagagcacctatggaccctaaaactaaagaacatatcctctttaatcgtcgacatgaggtagttacacctacatacgg |
115 |
Q |
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| T |
54265632 |
ctcacaaatatagaaatggcagaagagcacctatggaccctaaaactaaagaacatatcctctttaatcgtcgacatgaggtagttacacctacatacgg |
54265731 |
T |
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| Q |
116 |
ggcgctactgtttgagcgttgacacttcaaattgnnnnnnnnnnnnnnnnnnnnnggttacaacatactatattttatttcaaaattctccaaataaatc |
215 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
54265732 |
ggcgctactgtttgagcgttgacacttcaaattg-tcttttttttttttttttttggttacaacatactatattttatttcaaaattctccaaat-aatc |
54265829 |
T |
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| Q |
216 |
aatggaaaaaactaaaaggaaaata |
240 |
Q |
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||||||||||||||||||||||||| |
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| T |
54265830 |
aatggaaaaaactaaaaggaaaata |
54265854 |
T |
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