View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_165 (Length: 251)
Name: NF1715_low_165
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_165 |
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| [»] scaffold0054 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 41 - 237
Target Start/End: Complemental strand, 45627827 - 45627631
Alignment:
| Q |
41 |
attgagattcacatttgaatgggggagaggaacgagatgctttggtaggggagagtgagattgtggatttcaatttggggaaaagtggattgtgggtgag |
140 |
Q |
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| T |
45627827 |
attgagattcacgtttgaatgggggagaggaacgagatgctttggtaggggagagtgagattgtggatttcaatttgggggaaagtggattgtgggtgag |
45627728 |
T |
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| Q |
141 |
agtggtggaaatttaggtgtcagattgggggaaagtgaaattgatgaataaaattggattttagggttttgaaactatgggagggagaatgaaattg |
237 |
Q |
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| T |
45627727 |
agtggtggaaatttaggtgtcagattgggggaaaatgaaattgatgaataaaattggattttagggttttgaaactatgggagggagaatgaaattg |
45627631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 88 - 237
Target Start/End: Complemental strand, 30783960 - 30783811
Alignment:
| Q |
88 |
ggggagagtgagattgtggatttcaatttggggaaaagtggattgtgggtgagagtggtggaaatttaggtgtcagattgggggaaagtgaaattgatga |
187 |
Q |
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| T |
30783960 |
ggggagagtgagattgtggatttcaatttgggggaaagtggattgtgggtgagagaggtggaaatttaggtgtgagattgggcgaaagtgaaattgatga |
30783861 |
T |
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| Q |
188 |
ataaaattggattttagggttttgaaactatgggagggagaatgaaattg |
237 |
Q |
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| T |
30783860 |
ataaaattggattttagggttttgaaactatgggagggagaatgaaattg |
30783811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 112 - 209
Target Start/End: Complemental strand, 43994 - 43896
Alignment:
| Q |
112 |
aatttggggaaaagtg-gattgtgggtgagagtggtggaaatttaggtgtcagattgggggaaagtgaaattgatgaataaaattggattttagggttt |
209 |
Q |
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| T |
43994 |
aatttggggggaagtgagattatgggtgagtgtggtggagatttaggtttcagattgagggaaagtgagattgaggaataaaattgggttttagggttt |
43896 |
T |
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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 234
Target Start/End: Complemental strand, 31183622 - 31183541
Alignment:
| Q |
151 |
atttaggtgtcagattgggggaaagtgaaattgatgaataaaattggattttagggttttgaaactatgggagggagaatgaaa |
234 |
Q |
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| T |
31183622 |
atttaggtttcagattgggg-aaagtgagattga-gaataaaattgggttttagggttttgaagttgtgagagggagactgaaa |
31183541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 235
Target Start/End: Original strand, 30054058 - 30054128
Alignment:
| Q |
165 |
ttgggggaaagtgaaattgatgaataaaattggattttagggttttgaaactatgggagggagaatgaaat |
235 |
Q |
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| T |
30054058 |
ttgggggaaagttagattgtggaataaaattgggttttagggtttttgagcaatgggagggagactgaaat |
30054128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 235
Target Start/End: Original strand, 30145101 - 30145171
Alignment:
| Q |
165 |
ttgggggaaagtgaaattgatgaataaaattggattttagggttttgaaactatgggagggagaatgaaat |
235 |
Q |
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| T |
30145101 |
ttgggggaaagttagattgtggaataaaattgggttttagggtttttgagcaatgggagggagactgaaat |
30145171 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 12155689 - 12155738
Alignment:
| Q |
185 |
tgaataaaattggattttagggttttgaaactatgggagggagaatgaaa |
234 |
Q |
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| T |
12155689 |
tgaataaaatttggttttagggttttgaagctgtgggagagagaatgaaa |
12155738 |
T |
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