View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_170 (Length: 249)
Name: NF1715_low_170
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_170 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 23197594 - 23197745
Alignment:
| Q |
19 |
gttaaagtgtctgctaactgatgtacaaatttcataatgttttcttcaaattttgtcccattcattatgaacttggttcttggcgaatggttaggaaaac |
118 |
Q |
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| T |
23197594 |
gttaaagtgtctgctaactgatgtacaaatttcacaatgttttcttcaaattttgtcccattcattatgaacttggttattggcgaatggttaggaaaat |
23197693 |
T |
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| Q |
119 |
tatgatagctatcggtggtcacgaatagtgtataaaaatttctaaacttatt |
170 |
Q |
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| T |
23197694 |
tatgatagctatcggtggtcacgaatagtgtataaaaatttctaaacttatt |
23197745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 23200731 - 23200803
Alignment:
| Q |
166 |
ttattcaagtctataacgaaccacttgagtttgagttttgcttttttgctattttaattgctacctccccttt |
238 |
Q |
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| T |
23200731 |
ttattgaagtctctaacgaaccacttgagtttgagtcttgcttttttgctattttaattgctacctccccttt |
23200803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 24831890 - 24831816
Alignment:
| Q |
19 |
gttaaagtgtctgctaactgatgtacaaatttcataatgttttcttcaaattttgtcccattcattatgaacttg |
93 |
Q |
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| T |
24831890 |
gttaaagtgtccgctaacttttgtacaaatttcacaacgtttgcttcaaatcatgtcccattcattatgaacttg |
24831816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 23234339 - 23234227
Alignment:
| Q |
19 |
gttaaagtgtctgctaactgatgtacaaatttcataatgttttcttcaaattttgtcccattcattatgaacttggttcttggcgaatggttaggaaaac |
118 |
Q |
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| T |
23234339 |
gttaaggtgcctgctagttgttgtacaaatttcataatgtttgcttcaaatcttatcccagtcattatcaaggtgattctcagtgaatggttcggaaaac |
23234240 |
T |
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| Q |
119 |
tatgatagctatc |
131 |
Q |
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| T |
23234239 |
tttgatagatatc |
23234227 |
T |
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