View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_172 (Length: 248)
Name: NF1715_low_172
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_172 |
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| [»] scaffold0018 (1 HSPs) |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 11 - 232
Target Start/End: Complemental strand, 31053295 - 31053074
Alignment:
| Q |
11 |
cacagacatcaactcaaatataagaggtaccattgcttgcatcacaataatttcaatgtagtttagtagctaacattaagaaaagagatatatattttct |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31053295 |
cacagacatcaactcaaatataagaggtaccattgcttgcatcacaataatttcaatgtagtttagtagctaacattaagaaaagagatatatattttct |
31053196 |
T |
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| Q |
111 |
ttctatttatctcctcttttatgtaactgtcatgattctagccttctgatgcaagtctcattgatattctaactttacgatgtcatggtttcatgattgc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31053195 |
ttctatttatctcctcttttatgtaactgtcatgattctagccttctgatgcaagtctcattgatattctaactttacgatgtcatggtttcatgattgc |
31053096 |
T |
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| Q |
211 |
tgatcaatatgtaagatattat |
232 |
Q |
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|||||||||||||||||||||| |
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| T |
31053095 |
tgatcaatatgtaagatattat |
31053074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 232
Target Start/End: Original strand, 169954 - 170175
Alignment:
| Q |
11 |
cacagacatcaactcaaatataagaggtaccattgcttgcatcacaataatttcaatgtagtttagtagctaacattaagaaaagagatatatattttct |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
169954 |
cacagacatcaactcaaatataagaggtaccattgcttgcatcacaataatttcaatgtagtttagtagctaacattaagaaaagagatatatattttct |
170053 |
T |
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| Q |
111 |
ttctatttatctcctcttttatgtaactgtcatgattctagccttctgatgcaagtctcattgatattctaactttacgatgtcatggtttcatgattgc |
210 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
170054 |
ttctatttatctcatcttttatgtaactgtcatgattctagccttctgatgcaagtttcattgatattctaactttacgatgtcatggtttcatgattgc |
170153 |
T |
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| Q |
211 |
tgatcaatatgtaagatattat |
232 |
Q |
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|||| ||||||||||||||||| |
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| T |
170154 |
tgatgaatatgtaagatattat |
170175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 94 - 208
Target Start/End: Complemental strand, 5380313 - 5380201
Alignment:
| Q |
94 |
agagatatatattttctttctatttatctcctcttttatgtaactgtcat-gattctagccttctgatgcaagtctcattgatattctaactttacgatg |
192 |
Q |
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|||| ||||||||||||| ||||||||||||||| | ||||||||||| ||||||||||||||| ||||||| | |||||||||||||||||| | || |
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| T |
5380313 |
agaggtatatattttcttgctatttatctcctctgt---gtaactgtcattgattctagccttctggtgcaagtttgattgatattctaactttatgttg |
5380217 |
T |
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| Q |
193 |
tcatggtttcatgatt |
208 |
Q |
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| |||||||||||||| |
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| T |
5380216 |
ttatggtttcatgatt |
5380201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 5345212 - 5345268
Alignment:
| Q |
151 |
gccttctgatgcaagtctcattgatattctaactttacgatgtcatggtttcatgat |
207 |
Q |
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|||||||||||||||| | |||||||||||||||| | | ||||||||||||||||| |
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| T |
5345212 |
gccttctgatgcaagtttgattgatattctaacttaatgttgtcatggtttcatgat |
5345268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 5364313 - 5364265
Alignment:
| Q |
151 |
gccttctgatgcaagtctcattgatattctaactttacgatgtcatggt |
199 |
Q |
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|||||||||||||||| | |||||||||||||||||| | ||||||||| |
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| T |
5364313 |
gccttctgatgcaagtttgattgatattctaactttatgttgtcatggt |
5364265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 6481 - 6428
Alignment:
| Q |
30 |
ataagaggtaccattgcttgcatcacaataatttcaatgtagtttagtagctaa |
83 |
Q |
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|||||| |||||| ||||||||||| ||| |||||| ||||| ||||||||||| |
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| T |
6481 |
ataagaagtaccaatgcttgcatcagaatcatttcattgtaggttagtagctaa |
6428 |
T |
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