View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1715_low_174 (Length: 245)

Name: NF1715_low_174
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1715_low_174
NF1715_low_174
[»] chr4 (7 HSPs)
chr4 (1-225)||(7166833-7167057)
chr4 (26-219)||(46490894-46491092)
chr4 (27-156)||(46492481-46492611)
chr4 (26-156)||(46492933-46493064)
chr4 (26-135)||(7176956-7177066)
chr4 (41-135)||(46494575-46494669)
chr4 (121-156)||(46494350-46494385)
[»] chr7 (7 HSPs)
chr7 (30-109)||(12496323-12496402)
chr7 (30-109)||(12520188-12520267)
chr7 (30-109)||(12580477-12580556)
chr7 (30-104)||(12581035-12581109)
chr7 (30-109)||(12496852-12496931)
chr7 (30-109)||(12520717-12520796)
chr7 (172-219)||(48241147-48241194)


Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 7166833 - 7167057
Alignment:
Q  1 ttgatcctctgttaaaatatccttcataacaatcaagaagatgtctatggcgaagcattgagtctgttgcttaaagacaacatcaatgtaagtattaatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7166833 ttgatcctctgttaaaatatccttcataacaatcaagaagatgtctatggcgaagcattgagtctgttgcttaaagacaacatcaatgtaagtattaatc 7166932  T
Q  101 aatatttttcattcattattaattaactattctattagaaaaacacaagagtttcttctcctaatacgataatctatctttttaaatgtcacaggggatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7166933 aatatttttcattcattattaattaactattctattagaaaaacacaagagtttcttctcctaatacgataatctatctttttaaatgtcacaggggatg 7167032  T
Q  201 ttagaaagttttagagcgaggtgca 225  Q
    |||||||||||||||||||||||||    
T  7167033 ttagaaagttttagagcgaggtgca 7167057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 26 - 219
Target Start/End: Original strand, 46490894 - 46491092
Alignment:
Q  26 ataacaatcaagaagatgtctatggcgaagcattgagtctgttgcttaaagacaacatcaatgtaagtattaatcaatatttttcattcattattaatta 125  Q
    ||||||||||| |||||| ||||| | ||||  ||  ||| ||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  46490894 ataacaatcaaaaagatgcctatgacaaagccatgcatctcttgcttagagacaacatcaaagtaattattaatcaatatttttcattcattattaatta 46490993  T
Q  126 actattctattagaaaaacacaagagtttcttctcctaatacgat-----aatctatctttttaaatgtcacaggggatgttagaaagttttagagcga 219  Q
    |||||||||||||||||| |||||||||||| |  ||||||   |     |||||||||| ||| ||||||||| |||||||| |||||||| ||||||    
T  46490994 actattctattagaaaaatacaagagtttctacagctaataatttatacaaatctatcttgttatatgtcacagaggatgttaaaaagttttggagcga 46491092  T

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Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 27 - 156
Target Start/End: Complemental strand, 46492611 - 46492481
Alignment:
Q  27 taacaatcaagaagatgtctatggcgaagcattgagtctgttgcttaaagacaacatcaatgtaagtattaatcaatat-ttttcattcattattaatta 125  Q
    |||||||||| ||||||| |||||| || |||||||||| ||||||| ||||||| |||| |||||||||||||||||| ||||||||||||||||||||    
T  46492611 taacaatcaaaaagatgtttatggcaaaacattgagtctcttgcttagagacaacgtcaaagtaagtattaatcaatattttttcattcattattaatta 46492512  T
Q  126 actattctattagaaaaacacaagagtttct 156  Q
    | |||||||||||||||| ||||||||||||    
T  46492511 attattctattagaaaaatacaagagtttct 46492481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 26 - 156
Target Start/End: Original strand, 46492933 - 46493064
Alignment:
Q  26 ataacaatcaagaagatgtctatggcgaagcattgagtctgttgcttaaagacaacatcaatgtaagtattaatcaatatttt-tcattcattattaatt 124  Q
    ||||||||||| ||| ||| |||||| ||||    ||||| ||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  46492933 ataacaatcaaaaagttgtatatggcaaagccacaagtctcttgcttagagacaacatcaaagtaagtattaatcaatattttttcattcattattaatt 46493032  T
Q  125 aactattctattagaaaaacacaagagtttct 156  Q
    ||||||||||||||||||| ||||||||||||    
T  46493033 aactattctattagaaaaatacaagagtttct 46493064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 7176956 - 7177066
Alignment:
Q  26 ataacaatcaagaagatgtctatggcgaagcattgagtctgttgcttaaagacaacatcaatgtaagtattaatcaat-atttttcattcattattaatt 124  Q
    ||||||| ||||| |||||| ||||| |||||||  ||||||| ||||||||||| ||||| |||||||||||||||| |||||||||||||| ||||||    
T  7176956 ataacaaacaagatgatgtccatggcaaagcattaggtctgttacttaaagacaaaatcaaagtaagtattaatcaataatttttcattcattgttaatt 7177055  T
Q  125 aactattctat 135  Q
    |||||||||||    
T  7177056 aactattctat 7177066  T

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Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 135
Target Start/End: Complemental strand, 46494669 - 46494575
Alignment:
Q  41 atgtctatggcgaagcattgagtctgttgcttaaagacaacatcaatgtaagtattaatcaatatttttcattcattattaattaactattctat 135  Q
    ||||||||| | ||||| || |||| ||| | | |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  46494669 atgtctatgacaaagcactgggtctcttgttcagagacaacatcaaagtaagtattaatcaatattttttattcattattaattaactattctat 46494575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 156
Target Start/End: Complemental strand, 46494385 - 46494350
Alignment:
Q  121 aattaactattctattagaaaaacacaagagtttct 156  Q
    ||||||||||||||||||||||| ||||||||||||    
T  46494385 aattaactattctattagaaaaatacaagagtttct 46494350  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 12496402 - 12496323
Alignment:
Q  30 caatcaagaagatgtctatggcgaagcattgagtctgttgcttaaagacaacatcaatgtaagtattaatcaatattttt 109  Q
    |||||||||||||||| ||||| ||| | || ||||||||||||||||||||||||| || |||||||||||||| ||||    
T  12496402 caatcaagaagatgtccatggcaaaggactgggtctgttgcttaaagacaacatcaacgttagtattaatcaataatttt 12496323  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 12520267 - 12520188
Alignment:
Q  30 caatcaagaagatgtctatggcgaagcattgagtctgttgcttaaagacaacatcaatgtaagtattaatcaatattttt 109  Q
    |||||||||||||||| ||||| ||| | || ||||||||||||||||||||||||| || |||||||||||||| ||||    
T  12520267 caatcaagaagatgtccatggcaaaggactgggtctgttgcttaaagacaacatcaacgttagtattaatcaataatttt 12520188  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 12580556 - 12580477
Alignment:
Q  30 caatcaagaagatgtctatggcgaagcattgagtctgttgcttaaagacaacatcaatgtaagtattaatcaatattttt 109  Q
    |||||||||||||||| ||||| ||| | || ||||||||||||||||||||||||| || |||||||||||||| ||||    
T  12580556 caatcaagaagatgtccatggcaaaggactgggtctgttgcttaaagacaacatcaacgttagtattaatcaataatttt 12580477  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 12581035 - 12581109
Alignment:
Q  30 caatcaagaagatgtctatggcgaagcattgagtctgttgcttaaagacaacatcaatgtaagtattaatcaata 104  Q
    |||||||||||||||| ||||| ||| |||| |||||||| ||| ||||||||||||||| ||||| ||||||||    
T  12581035 caatcaagaagatgtccatggcaaagaattgggtctgttggttagagacaacatcaatgttagtatcaatcaata 12581109  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 109
Target Start/End: Original strand, 12496852 - 12496931
Alignment:
Q  30 caatcaagaagatgtctatggcgaagcattgagtctgttgcttaaagacaacatcaatgtaagtattaatcaatattttt 109  Q
    |||||||||||||||| ||| | ||| |||| |||||||| ||| ||||||||||||||| ||||| |||||||| ||||    
T  12496852 caatcaagaagatgtccatgacaaagaattgggtctgttggttagagacaacatcaatgttagtatcaatcaataatttt 12496931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 109
Target Start/End: Original strand, 12520717 - 12520796
Alignment:
Q  30 caatcaagaagatgtctatggcgaagcattgagtctgttgcttaaagacaacatcaatgtaagtattaatcaatattttt 109  Q
    |||||||||||||||| ||| | ||| |||| |||||||| ||| ||||||||||||||| ||||| |||||||| ||||    
T  12520717 caatcaagaagatgtccatgtcaaagaattgggtctgttggttagagacaacatcaatgttagtatcaatcaataatttt 12520796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 48241194 - 48241147
Alignment:
Q  172 atctatctttttaaatgtcacaggggatgttagaaagttttagagcga 219  Q
    ||||||||| ||| ||||||||| |||||||| |||||||||||||||    
T  48241194 atctatcttgttacatgtcacagaggatgttaaaaagttttagagcga 48241147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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