View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1715_low_18 (Length: 542)

Name: NF1715_low_18
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1715_low_18
NF1715_low_18
[»] chr1 (2 HSPs)
chr1 (19-520)||(8562947-8563439)
chr1 (434-494)||(31768333-31768393)
[»] chr2 (3 HSPs)
chr2 (436-520)||(5850210-5850290)
chr2 (427-490)||(9845608-9845671)
chr2 (455-491)||(40756137-40756173)
[»] chr5 (1 HSPs)
chr5 (428-484)||(5747921-5747977)
[»] chr3 (2 HSPs)
chr3 (427-484)||(41585945-41586002)
chr3 (428-490)||(44064189-44064251)
[»] chr7 (2 HSPs)
chr7 (428-490)||(24307756-24307818)
chr7 (425-490)||(14629816-14629881)
[»] chr4 (2 HSPs)
chr4 (427-490)||(31805959-31806022)
chr4 (91-128)||(7671651-7671688)
[»] chr8 (2 HSPs)
chr8 (428-490)||(25246211-25246273)
chr8 (428-490)||(38660076-38660138)


Alignment Details
Target: chr1 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 19 - 520
Target Start/End: Complemental strand, 8563439 - 8562947
Alignment:
Q  19 gggtcatgctgactagtgtccttaagaaatttgttaaggaaacaaaagtaaattttatattgaaaaagttccaagatagttttattatatttgattactt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8563439 gggtcatgctgactagtgtccttaagaaatttgttaaggaaacaaaagtaaattttatattgaaaaagtttcaagatagttttattatatttgattactt 8563340  T
Q  119 aacaagtgtcacaagtagttaccatttttatgtaagtttttaagatctctttagaaataagcatcacatcacaaacctaaaggttaagtttgtcagttgc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||     ||||||||||    
T  8563339 aacaagtgtcacaagtagttaccatttttatgtaagtttttaagatctctttagaaataagtatcacatcacaaacctaaaggtt-----tgtcagttgc 8563245  T
Q  219 ccgccacaagctgtggacattacaaactaacaatgtaaccagatgatagaggtcctgtgatttacattcatccaattcaatagatggattgtcctcaaag 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  8563244 ccgccacaagctgtggacattacaaactaacaatgtaaccagatgatagaggtcctgtgatttacatccatccaatccaatagatggattgtcctcaaag 8563145  T
Q  319 aaggacctcaaatgagtcaaaataaagggggttcgacccacgttgcttcagaggatcttaagtaagcagattctcgatcaagtttatgttcaaccacttt 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||    
T  8563144 aaggacctcaaatgagtcaaaataaagggggttcgacccacgttgcttcagaagatgttaagtaagcaaattctcgatcaagtttatgttcaaccacttt 8563045  T
Q  419 cacctctctggtggggtttagtataggaaagaggagttctttctcttcatgggaaagttgaaccacaaccatgaatgaatttattaattttttaattgga 518  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||  |||||||||||||||||||    ||||||||||||||||||||||||    
T  8563044 cacctctctggtggggtttagtatgggaaagaggagttctttcccttcatgaaaaagttgaaccacaaccat----gaatttattaattttttaattgga 8562949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 434 - 494
Target Start/End: Original strand, 31768333 - 31768393
Alignment:
Q  434 gtttagtataggaaagaggagttctttctcttcatgggaaagttgaaccacaaccatgaat 494  Q
    ||||||||| | |||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  31768333 gtttagtatggaaaaggggagttctttcccttcatgggaaagttgaaccacaaccatgaat 31768393  T

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Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 436 - 520
Target Start/End: Original strand, 5850210 - 5850290
Alignment:
Q  436 ttagtataggaaagaggagttctttctcttcatgggaaagttgaaccacaaccatgaatgaatttattaattttttaattggatg 520  Q
    ||||||| |||||||||||||||||| |||||| |||||||||||||||||||    ||||||||||||||||||||||||||||    
T  5850210 ttagtatgggaaagaggagttctttcccttcataggaaagttgaaccacaacc----atgaatttattaattttttaattggatg 5850290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 427 - 490
Target Start/End: Original strand, 9845608 - 9845671
Alignment:
Q  427 tggtggggtttagtataggaaagaggagttctttctcttcatgggaaagttgaaccacaaccat 490  Q
    |||||||||||||||| |||||  ||||||||||   || ||||||||||||||||||||||||    
T  9845608 tggtggggtttagtatgggaaatgggagttcttttcgtttatgggaaagttgaaccacaaccat 9845671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 455 - 491
Target Start/End: Original strand, 40756137 - 40756173
Alignment:
Q  455 ttctttctcttcatgggaaagttgaaccacaaccatg 491  Q
    ||||||| ||||||||||||||||||||| |||||||    
T  40756137 ttctttcccttcatgggaaagttgaaccagaaccatg 40756173  T

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Target: chr5 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 428 - 484
Target Start/End: Original strand, 5747921 - 5747977
Alignment:
Q  428 ggtggggtttagtataggaaagaggagttctttctcttcatgggaaagttgaaccac 484  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  5747921 ggtggggtttagtatgggaaagaggagttctttcccttcatgggaaagttgaaccac 5747977  T

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Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 427 - 484
Target Start/End: Complemental strand, 41586002 - 41585945
Alignment:
Q  427 tggtggggtttagtataggaaagaggagttctttctcttcatgggaaagttgaaccac 484  Q
    |||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||    
T  41586002 tggtggggtttagtatggaaaagaggagttctttttcttcatgggaaagttgaaccac 41585945  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 428 - 490
Target Start/End: Original strand, 44064189 - 44064251
Alignment:
Q  428 ggtggggtttagtataggaaagaggagttctttctcttcatgggaaagttgaaccacaaccat 490  Q
    |||||||| |||||| | |||| | ||||||||| | ||||||||||||||||||||||||||    
T  44064189 ggtggggtatagtatggaaaagggaagttctttcccatcatgggaaagttgaaccacaaccat 44064251  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 428 - 490
Target Start/End: Complemental strand, 24307818 - 24307756
Alignment:
Q  428 ggtggggtttagtataggaaagaggagttctttctcttcatgggaaagttgaaccacaaccat 490  Q
    ||||| ||||||||| |||||| ||||||||||  ||||||||||||||||||||||||||||    
T  24307818 ggtggagtttagtatgggaaaggggagttcttttccttcatgggaaagttgaaccacaaccat 24307756  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 425 - 490
Target Start/End: Original strand, 14629816 - 14629881
Alignment:
Q  425 tctggtggggtttagtataggaaagaggagttctttctcttcatgggaaagttgaaccacaaccat 490  Q
    |||||||| ||||||||| |||||| | ||||||||  | ||||||||||||||||||||||||||    
T  14629816 tctggtggagtttagtatgggaaagggaagttcttttccatcatgggaaagttgaaccacaaccat 14629881  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 490
Target Start/End: Original strand, 31805959 - 31806022
Alignment:
Q  427 tggtggggtttagtataggaaagaggagttctttctcttcatgggaaagttgaaccacaaccat 490  Q
    |||||| ||||| |||||||||| | ||||||||  | ||||||||||||||||| ||||||||    
T  31805959 tggtggagtttaatataggaaagggaagttcttttccatcatgggaaagttgaactacaaccat 31806022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 128
Target Start/End: Original strand, 7671651 - 7671688
Alignment:
Q  91 aagatagttttattatatttgattacttaacaagtgtc 128  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  7671651 aagatatttttattatatttgattccttaacaagtgtc 7671688  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 428 - 490
Target Start/End: Original strand, 25246211 - 25246273
Alignment:
Q  428 ggtggggtttagtataggaaagaggagttctttctcttcatgggaaagttgaaccacaaccat 490  Q
    |||| |||||||||| |||||||  | ||||||| ||||||||||||||||||| | ||||||    
T  25246211 ggtgaggtttagtatgggaaagaaaacttctttcccttcatgggaaagttgaactagaaccat 25246273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 428 - 490
Target Start/End: Original strand, 38660076 - 38660138
Alignment:
Q  428 ggtggggtttagtataggaaagaggagttctttctcttcatgggaaagttgaaccacaaccat 490  Q
    |||| |||||||||| |||||| | |||| |||| ||| ||||||||||| ||||||||||||    
T  38660076 ggtgaggtttagtatgggaaagggaagttgtttcccttgatgggaaagtttaaccacaaccat 38660138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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