View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_181 (Length: 242)
Name: NF1715_low_181
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_181 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 5548670 - 5548464
Alignment:
| Q |
17 |
cataggtgaataggtgaaatattaatatgataagccagttcagtgattcttattggttgatcacttatttcactgactttaattttaaaagaatttatta |
116 |
Q |
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| T |
5548670 |
cataggtgaataggtgaaatattaatatgataagccagttcagtgattcttattggttgatcacttatttcactgactttaattttaaaagaatttatta |
5548571 |
T |
|
| Q |
117 |
tactctatgaatgaattggaagaaattgtttttctatagaagggtgtatttgtactatagaagataaatgttagggctcaaatggaagagggaaaaagag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5548570 |
tactctatgaatgaattggaagaaattgtttttctatagaagggtgtatttgtactatagaagataaatgttagggctcaaatggaagagggaaaaagag |
5548471 |
T |
|
| Q |
217 |
aaccaag |
223 |
Q |
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||||||| |
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| T |
5548470 |
aaccaag |
5548464 |
T |
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