View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1715_low_184 (Length: 241)

Name: NF1715_low_184
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1715_low_184
NF1715_low_184
[»] chr3 (17 HSPs)
chr3 (1-227)||(34475805-34476031)
chr3 (1-224)||(2392557-2392780)
chr3 (1-224)||(2394304-2394527)
chr3 (18-225)||(47235522-47235729)
chr3 (3-225)||(20611589-20611811)
chr3 (16-225)||(45163655-45163868)
chr3 (1-223)||(19176311-19176532)
chr3 (1-169)||(23328401-23328565)
chr3 (1-224)||(14755316-14755537)
chr3 (15-159)||(25647557-25647700)
chr3 (1-169)||(40023623-40023789)
chr3 (37-125)||(37123289-37123376)
chr3 (27-148)||(4464013-4464132)
chr3 (1-159)||(14193812-14193970)
chr3 (1-51)||(45398776-45398826)
chr3 (1-70)||(9584104-9584173)
chr3 (25-130)||(823510-823614)
[»] chr8 (14 HSPs)
chr8 (1-225)||(34389056-34389280)
chr8 (1-225)||(32066346-32066570)
chr8 (3-225)||(9519305-9519527)
chr8 (1-225)||(24995446-24995670)
chr8 (1-225)||(36630643-36630867)
chr8 (11-227)||(37986919-37987135)
chr8 (79-225)||(31210319-31210466)
chr8 (1-182)||(10248604-10248783)
chr8 (1-227)||(15821430-15821656)
chr8 (1-83)||(31207413-31207494)
chr8 (1-172)||(17657053-17657222)
chr8 (109-170)||(10552132-10552192)
chr8 (1-63)||(16457512-16457572)
chr8 (99-169)||(35062321-35062390)
[»] chr7 (22 HSPs)
chr7 (1-225)||(38306067-38306291)
chr7 (4-225)||(47325939-47326160)
chr7 (5-227)||(25160619-25160841)
chr7 (1-225)||(3419707-3419931)
chr7 (11-225)||(5860349-5860563)
chr7 (1-226)||(10243992-10244212)
chr7 (1-225)||(3866923-3867146)
chr7 (11-225)||(37794807-37795009)
chr7 (12-223)||(33434918-33435128)
chr7 (1-120)||(41089799-41089918)
chr7 (1-225)||(16954459-16954683)
chr7 (1-159)||(44755500-44755656)
chr7 (1-159)||(8745026-8745183)
chr7 (37-177)||(6716823-6716962)
chr7 (1-221)||(34389771-34389992)
chr7 (1-224)||(42533303-42533527)
chr7 (1-156)||(35745878-35746031)
chr7 (1-63)||(6584877-6584939)
chr7 (13-179)||(16828999-16829164)
chr7 (1-125)||(1320701-1320824)
chr7 (1-170)||(13311700-13311869)
chr7 (113-170)||(38485420-38485476)
[»] chr4 (16 HSPs)
chr4 (1-225)||(30964247-30964471)
chr4 (1-225)||(8254833-8255057)
chr4 (1-225)||(8268251-8268475)
chr4 (1-225)||(4305531-4305755)
chr4 (3-171)||(2825646-2825811)
chr4 (1-177)||(25753027-25753202)
chr4 (1-170)||(31050713-31050880)
chr4 (1-125)||(53823472-53823595)
chr4 (1-125)||(39421064-39421187)
chr4 (17-123)||(30167631-30167736)
chr4 (5-125)||(19815279-19815398)
chr4 (89-170)||(12296037-12296118)
chr4 (8-125)||(19673008-19673124)
chr4 (3-159)||(22811213-22811367)
chr4 (89-170)||(46698923-46699003)
chr4 (5-69)||(46698840-46698904)
[»] chr1 (25 HSPs)
chr1 (1-225)||(41920259-41920482)
chr1 (1-225)||(31585811-31586035)
chr1 (1-225)||(24449981-24450205)
chr1 (1-225)||(46692870-46693094)
chr1 (1-222)||(5389472-5389693)
chr1 (1-225)||(30685955-30686179)
chr1 (1-224)||(24684529-24684750)
chr1 (15-225)||(20113586-20113796)
chr1 (1-169)||(7857517-7857683)
chr1 (1-169)||(24658793-24658959)
chr1 (1-159)||(46814518-46814674)
chr1 (1-125)||(9313340-9313463)
chr1 (1-59)||(5459133-5459191)
chr1 (59-177)||(38544846-38544963)
chr1 (1-177)||(32864612-32864789)
chr1 (1-68)||(27031891-27031958)
chr1 (37-177)||(16147410-16147549)
chr1 (1-125)||(34774779-34774901)
chr1 (95-170)||(50589349-50589424)
chr1 (93-159)||(6583333-6583399)
chr1 (1-179)||(17033439-17033616)
chr1 (108-172)||(10785489-10785553)
chr1 (113-169)||(27032024-27032080)
chr1 (43-120)||(27102102-27102178)
chr1 (1-53)||(6583267-6583319)
[»] chr2 (15 HSPs)
chr2 (4-225)||(39338919-39339140)
chr2 (1-225)||(10523903-10524127)
chr2 (1-227)||(7874095-7874321)
chr2 (1-170)||(14106575-14106743)
chr2 (1-224)||(17105218-17105441)
chr2 (1-177)||(1269337-1269513)
chr2 (1-76)||(387129-387203)
chr2 (1-159)||(37770692-37770849)
chr2 (11-179)||(41086849-41087014)
chr2 (1-68)||(14405162-14405228)
chr2 (139-177)||(16952570-16952608)
chr2 (139-177)||(17023235-17023273)
chr2 (139-177)||(17060541-17060579)
chr2 (139-177)||(17079025-17079063)
chr2 (193-225)||(7695874-7695906)
[»] chr5 (12 HSPs)
chr5 (4-225)||(698167-698388)
chr5 (1-225)||(18593049-18593273)
chr5 (1-227)||(34377902-34378128)
chr5 (4-148)||(29087364-29087508)
chr5 (1-172)||(7392082-7392252)
chr5 (1-159)||(13954285-13954441)
chr5 (22-153)||(8297347-8297477)
chr5 (1-125)||(14302481-14302604)
chr5 (1-119)||(33258933-33259050)
chr5 (1-173)||(7195290-7195461)
chr5 (54-177)||(26046068-26046190)
chr5 (11-103)||(25991936-25992027)
[»] scaffold0068 (1 HSPs)
scaffold0068 (1-225)||(35822-36047)
[»] chr6 (7 HSPs)
chr6 (1-225)||(16510352-16510568)
chr6 (1-219)||(3117304-3117523)
chr6 (1-172)||(20701854-20702024)
chr6 (12-161)||(15132585-15132732)
chr6 (1-159)||(3880634-3880791)
chr6 (4-168)||(32935393-32935556)
chr6 (106-182)||(13423444-13423519)
[»] scaffold0050 (1 HSPs)
scaffold0050 (1-159)||(36580-36737)
[»] scaffold0200 (1 HSPs)
scaffold0200 (1-177)||(19237-19413)
[»] scaffold0119 (1 HSPs)
scaffold0119 (1-177)||(42189-42365)
[»] scaffold0063 (1 HSPs)
scaffold0063 (1-125)||(58034-58157)
[»] scaffold1613 (1 HSPs)
scaffold1613 (59-177)||(1125-1242)


Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 34475805 - 34476031
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||    
T  34475805 agtgatcggcccaccagactatagaaacaaattagcagggcacccctcgcccccggtacaccagagaaaaatcaaaccaagtcaaacaaaaattgcagct 34475904  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcgaagtttaaacaaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34475905 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacgatatgtaagacaaaagacaaggcatgcgaagtttaaacaaca 34476004  T
Q  201 aacaaatcaaaaggaaaaggctcaaac 227  Q
    |||||||| ||||||||||||||||||    
T  34476005 aacaaatccaaaggaaaaggctcaaac 34476031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 2392557 - 2392780
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  2392557 agtgatcggtccaccaggctatagtaccaaattagcagggcacccctcgcccccggtacaccagagtaaaaccaaaccaagtcaaacaaagattgcagct 2392656  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcgaagtttaaacaaca 200  Q
    ||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||| ||||    
T  2392657 agaccccgactcccgatcttgaagccaaatgaaccgtcccatcgaaaaccagcacacaatatgtaagacgaaagacatggcgtgcgaagtttaaataaca 2392756  T
Q  201 aacaaatcaaaaggaaaaggctca 224  Q
    ||||||||||||||| ||| ||||    
T  2392757 aacaaatcaaaaggacaagactca 2392780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 2394304 - 2394527
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  2394304 agtgatcggtccaccaggctatagtaccaaattagcagggcacccctcgcccccggtacaccagagtaaaaccaaaccaagtcaaacaaagattgcagct 2394403  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcgaagtttaaacaaca 200  Q
    ||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||| ||||    
T  2394404 agaccccgactcccgatcttgaagccaaatgaaccgtcccatcgaaaaccagcacacaatatgtaagacgaaagacatggcgtgcgaagtttaaataaca 2394503  T
Q  201 aacaaatcaaaaggaaaaggctca 224  Q
    ||||||||||||||| ||| ||||    
T  2394504 aacaaatcaaaaggacaagactca 2394527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 47235729 - 47235522
Alignment:
Q  18 actatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagctagaccccgactcccgat 117  Q
    |||||||  |||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  47235729 actatagtcccaaattagcagggcacccctcgcccccggtacactggagaaaaaccaaaccaagtcaaacaaagattgcagctagaccctgactcccgat 47235630  T
Q  118 ctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcgaagtttaaacaacaaacaaatcaaaaggaaa 217  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||    
T  47235629 ctcgaagccaaatgaaccggcccatcgaaaaccagcacacattatgtaagacgaaagacatggcgtgcgaagtttaaacaacaaacaaatcaaaaggaaa 47235530  T
Q  218 aggctcaa 225  Q
    ||||||||    
T  47235529 aggctcaa 47235522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 3 - 225
Target Start/End: Complemental strand, 20611811 - 20611589
Alignment:
Q  3 tgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagctag 102  Q
    ||||||| ||| || ||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  20611811 tgatcggcccaacaaactatagtacgaaattagcagggcacccctcgcccccggtacaccagagaaaaaccaaatcaagtcaaacaaagattgcagctag 20611712  T
Q  103 accccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcgaagtttaaacaacaaa 202  Q
    ||||||||||| ||||||||| ||||||||| || |||| ||||||||||||||||||||||||||| ||| |||  ||||||||||||| ||||| |||    
T  20611711 accccgactcctgatctcgaaaccaaatgaaccgacccaccgaaaaccagcacacaatatgtaagacgaaaaacatagcatgcgaagtttgaacaataaa 20611612  T
Q  203 caaatcaaaaggaaaaggctcaa 225  Q
    |||||||||||||||||||||||    
T  20611611 caaatcaaaaggaaaaggctcaa 20611589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 45163868 - 45163655
Alignment:
Q  16 agactatagaaccaaattagcagggcacccctcgccctcggtaca----ccagagaaaaaccaaaccaagtcaaacaaagattgcagctagaccccgact 111  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    | ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  45163868 agactatagtaccaaattagcagggcacccctcgccctcggtacatgcactagagaaaaatcaaaccaagtcaaacaaagattgcagctagaccccgact 45163769  T
Q  112 cccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcgaagtttaaacaacaaacaaatcaaa 211  Q
     ||||||| ||||||||||||| ||||| ||| ||||||||||||||||||||||||| ||||||| ||| ||||||||||||| ||||||||||| |||    
T  45163768 tccgatcttgaagccaaatgaaccggcctatcaaaaaccagcacacaatatgtaagacgaaagacatggcgtgcgaagtttaaataacaaacaaataaaa 45163669  T
Q  212 aggaaaaggctcaa 225  Q
    |||| ||| |||||    
T  45163668 aggacaagactcaa 45163655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 19176532 - 19176311
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||| |||||||||| |||||||||||||||||||||||| || | | ||||||| |||||||||||||||  ||||||||||||||||||||||    
T  19176532 agtgatcggcccaccagactttagaaccaaattagcagggcaccc-tcactcccggtacatcagagaaaaaccaaattaagtcaaacaaagattgcagct 19176434  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcgaagtttaaacaaca 200  Q
    ||||||||||||| ||||||||||||||| ||| | ||||| ||||||||||||||||||| ||||||  ||||||| |||||| ||||||||| |||||    
T  19176433 agaccccgactcctgatctcgaagccaaaggaaccagcccaccgaaaaccagcacacaataagtaagaggaaagacatggcatgtgaagtttaaccaaca 19176334  T
Q  201 aacaaatcaaaaggaaaaggctc 223  Q
    ||||||||| |||||||| ||||    
T  19176333 aacaaatcacaaggaaaaagctc 19176311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 23328401 - 23328565
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    |||||||||||||||| ||| ||||||||||| | ||||||||||||||||| ||||||||||||| || |||| | ||||||||||||| |||||||||    
T  23328401 agtgatcggtccaccaaactttagaaccaaatcaacagggcacccctcgcccccggtacaccagag-aacaccatatcaagtcaaacaaa-attgcagct 23328498  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagac 169  Q
    |||| || ||||||||||||||||| |||  || |||||||||| | ||||||||||||||||||||||    
T  23328499 agacaccaactcccgatctcgaagcaaaa--aaccggcccatcggacaccagcacacaatatgtaagac 23328565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 14755316 - 14755537
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||| |||||||||| ||| || |||  |  |||||||||||| || ||||||||||||||||| |||||| |  |  |||| ||||||||||||    
T  14755316 agtgatcggcccaccagactttagcacaaaaaaa--agggcacccctcaccttcggtacaccagagaaacaccaaaacgcgcgaaac-aagattgcagct 14755412  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcga-agtttaaacaac 199  Q
    |||  |||||||||||||||||||| |||  || |||||||||| ||| |||||||||| | | | | |||| |||| |  |||||| |||  |||||||    
T  14755413 agataccgactcccgatctcgaagcaaaagtaaccggcccatcggaaatcagcacacaaaaagaatggcaaatgacatgatatgcgatagtgcaaacaac 14755512  T
Q  200 aaacaaatcaaaaggaaaaggctca 224  Q
     ||||||||||||||| ||| ||||    
T  14755513 gaacaaatcaaaaggagaagactca 14755537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 159
Target Start/End: Complemental strand, 25647700 - 25647557
Alignment:
Q  15 cagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagctagaccccgactccc 114  Q
    |||||| ||| ||||||| || ||||||||| || | | |||||||||||||||| |||||| || | |||||| | ||||||||||||| |||||||||    
T  25647700 cagactttaggaccaaatcagaagggcacccttcactcccggtacaccagagaaacaccaaatcacgccaaacaga-attgcagctagacaccgactccc 25647602  T
Q  115 gatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaa 159  Q
    | ||||||||| |||  || |||||||||| |||||| |||||||    
T  25647601 gttctcgaagcaaaagtaaccggcccatcggaaaccaacacacaa 25647557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 40023623 - 40023789
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    |||||||||||||||||||| || ||| |||| ||||||||| ||||||||| |||||||| |||| || |||| | |||||||||  | ||||||||||    
T  40023623 agtgatcggtccaccagactttaaaacaaaatcagcagggca-ccctcgcccccggtacactagag-aacaccatatcaagtcaaaacatgattgcagct 40023720  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagac 169  Q
    |||| || ||| ||||||||||||| |||  || ||| ||| || | ||||  ||||||||||||||||    
T  40023721 agacaccaacttccgatctcgaagcaaaaataaccggtccaccggacaccaatacacaatatgtaagac 40023789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 125
Target Start/End: Complemental strand, 37123376 - 37123289
Alignment:
Q  37 agggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagctagaccccgactcccgatctcgaagc 125  Q
    |||||||||||| || |||||||| |||||||| |||||| || | |||||||| ||||||||||||| ||||||||||||||||||||    
T  37123376 agggcacccctctccttcggtacatcagagaaacaccaaatcacgccaaacaaa-attgcagctagacaccgactcccgatctcgaagc 37123289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 148
Target Start/End: Original strand, 4464013 - 4464132
Alignment:
Q  27 ccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagctagaccccgactcccgatctcgaagcc 126  Q
    |||||| || |||||||||||| |||||||||||| ||||||| |||||| || | || |||| ||||||| |||||| ||||||||||||||||||||     
T  4464013 ccaaatcagaagggcacccctcaccctcggtacac-agagaaacaccaaatcacgccacacaa-gattgcaactagacaccgactcccgatctcgaagca 4464110  T
Q  127 aaatgaatcggcccatcgaaaa 148  Q
    |||  || ||||||| ||||||    
T  4464111 aaagtaaccggcccaccgaaaa 4464132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 14193970 - 14193812
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaa-aaaccaaaccaagtcaaacaaagattgcagc 99  Q
    |||||||||||| ||||||| ||| ||||||| || |||||||||||| | | |||||||||| |||| | |||||| || | ||| || | |||| |||    
T  14193970 agtgatcggtccgccagactttaggaccaaatcagaagggcacccctcactcccggtacaccaaagaacacaccaaatcacgccaagcaga-attgtagc 14193872  T
Q  100 tagaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaa 159  Q
    ||||| |||||||||||| ||||||| |||  | ||||| ||||  |||| |||||||||    
T  14193871 tagacaccgactcccgatatcgaagcaaaagtagtcggcgcatcagaaactagcacacaa 14193812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 45398826 - 45398776
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgcc 51  Q
    |||||||||||||||||||| || | |||||| ||||||||||||||||||    
T  45398826 agtgatcggtccaccagactttaaatccaaatcagcagggcacccctcgcc 45398776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 9584104 - 9584173
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcaccc-ctcgccctcggtacaccagagaaaa 70  Q
    |||||||| ||||||||||| ||| | |||||||||||||||||| ||| ||| |||||||| ||||||||    
T  9584104 agtgatcgatccaccagactttagtatcaaattagcagggcaccctctc-cccccggtacacaagagaaaa 9584173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 130
Target Start/End: Original strand, 823510 - 823614
Alignment:
Q  25 aaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagctagaccccgactcccgatctcgaag 124  Q
    ||||||||| | ||||||||| |  ||| |||| ||||||||||| |||| | |||| ||||| ||||||||| |||||| || ||||| ||||| ||||    
T  823510 aaccaaatttgaagggcaccctttacccacggtccaccagagaaacaccataacaagccaaac-aagattgcaactagacaccaactcctgatcttgaag 823608  T
Q  125 ccaaat 130  Q
    | ||||    
T  823609 caaaat 823614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 34389056 - 34389280
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||| |||||||||    
T  34389056 agtgatcggcccaccagactatagtaccaaattagcagggcacccctcgcccctggtacaccagagaaaaaccaaatcaagtcaaacaaaaattgcagct 34389155  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcgaagtttaaacaaca 200  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||    
T  34389156 agaccccgactcccgatctcgaagccaaatgaaccggcctatcgaaaaccagcacacaatatgtaagacgaaagacatggcatgtgaagtttaaacaaca 34389255  T
Q  201 aacaaatcaaaaggaaaaggctcaa 225  Q
    |||||||||||||||||||||||||    
T  34389256 aacaaatcaaaaggaaaaggctcaa 34389280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 32066346 - 32066570
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| ||    
T  32066346 agtgatcggcccaccagactatagcaccaaattagcagggcacccctcgcccccggtacactagagaaaaaccaaatcaagtcaaacaaagattgcaact 32066445  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcgaagtttaaacaaca 200  Q
    ||||||||| |||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||    
T  32066446 agaccccgaatcccgatctcaaagccaaatgaaccggcccaccgaaaaccagcacacaatatgtaagacgaaagacatggcatgcgaagtttgaacaaca 32066545  T
Q  201 aacaaatcaaaaggaaaaggctcaa 225  Q
    |||||||||||| ||||||||||||    
T  32066546 aacaaatcaaaaagaaaaggctcaa 32066570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 3 - 225
Target Start/End: Complemental strand, 9519527 - 9519305
Alignment:
Q  3 tgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagctag 102  Q
    ||||||| |||| ||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9519527 tgatcggcccactagactatagtaccaaattagcagggcacccctcacccccggtacaccagagaaaaaccaaatcaagtcaaacaaagattgcagctag 9519428  T
Q  103 accccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcgaagtttaaacaacaaa 202  Q
    ||||||||||||||||||||||||||||||| ||||| |  |||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||    
T  9519427 accccgactcccgatctcgaagccaaatgaaccggcctactgaaaaccagcacacaatatgtaagacgaaagaaatggcatgcgaagtttaaacaacaaa 9519328  T
Q  203 caaatcaaaaggaaaaggctcaa 225  Q
    ||||| |||||||||||||||||    
T  9519327 caaataaaaaggaaaaggctcaa 9519305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 24995446 - 24995670
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||| |||||||||||||| |||||||||||| | |||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||    
T  24995446 agtgatcggcccaccagactatagtaccaaattagcaagacacccctcgcccccagtacaccagagaaaaaccaaatcaagtcaaacaaagattgcagct 24995545  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcgaagtttaaacaaca 200  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||| |||  |||| ||||||||||||||||    
T  24995546 agaccccgactcccgatctcgaagccaaatgaaccggcccaccgaaaaccagcacacaatatgtaagacgaaaaacatagcatacgaagtttaaacaaca 24995645  T
Q  201 aacaaatcaaaaggaaaaggctcaa 225  Q
    || ||||||||||||||| ||||||    
T  24995646 aataaatcaaaaggaaaatgctcaa 24995670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 36630867 - 36630643
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||    
T  36630867 agtgatcggcccaccagactttagaaccaaattagcagggcacccctcgcccccggtacaccaaagaaaaaccaaatcaagtcaaacaaagattgcagct 36630768  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcgaagtttaaacaaca 200  Q
    ||||| || |||||||||||||||||||||||| ||||| | ||||||||| ||||||||||||||||| ||||||| |||||||||||||||| |||||    
T  36630767 agacctcgtctcccgatctcgaagccaaatgaaccggcctaccgaaaaccaacacacaatatgtaagacgaaagacatggcatgcgaagtttaaccaaca 36630668  T
Q  201 aacaaatcaaaaggaaaaggctcaa 225  Q
    ||||||||| |||||||||| ||||    
T  36630667 aacaaatcacaaggaaaaggttcaa 36630643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 37986919 - 37987135
Alignment:
Q  11 ccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagctagaccccgac 110  Q
    |||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||| |||| ||||||||||||    
T  37986919 ccaccagactataacaccaaattagcagggcacccctcgcccccggtacaccagagaaaaaccaaatcaagtcaaataaagaatgcaactagaccccgac 37987018  T
Q  111 tcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcgaagtttaaacaacaaacaaatcaa 210  Q
    | ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||    
T  37987019 taccgatctcgaagccaaatgaaccggcccaccgaaaaccagcacacaatatgtaagacgaaagacatggcatgcgaagtttgaacaacaaacaaatcaa 37987118  T
Q  211 aaggaaaaggctcaaac 227  Q
    || ||||||||||||||    
T  37987119 aaagaaaaggctcaaac 37987135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 79 - 225
Target Start/End: Original strand, 31210319 - 31210466
Alignment:
Q  79 aagtcaaacaaagattgcagctagaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacac-aatatgtaagacaaaagaca 177  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||| ||||||||||| ||| |||||||||||| |||||||    
T  31210319 aagtcaaacaaagattgcagctagaccctgactcccgatcttgaagccaaatgaaccggcccaccgaaaaccagcgcacaaatatgtaagacgaaagaca 31210418  T
Q  178 aggcatgcgaagtttaaacaacaaacaaatcaaaaggaaaaggctcaa 225  Q
     |||||||||||||| ||||||||||||||||||||||||||||||||    
T  31210419 tggcatgcgaagtttgaacaacaaacaaatcaaaaggaaaaggctcaa 31210466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 10248604 - 10248783
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    |||||||||||||||| | | ||| || ||||||| ||| |||||||| ||| |||||||||||||||| |||||| |||| |||||||| |||||||||    
T  10248604 agtgatcggtccaccaaattttaggacaaaattagaaggacacccctcacccccggtacaccagagaaacaccaaatcaagccaaacaaa-attgcagct 10248702  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggca 182  Q
    |||| |||||||||||||||||||| |||  ||  |||||| || |||||| ||||||| | |||||||||| |||||||||    
T  10248703 agacaccgactcccgatctcgaagcaaaagtaactggcccaccggaaaccaccacacaa-aagtaagacaaacgacaaggca 10248783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 15821430 - 15821656
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||| | |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| || |||| | |||| ||||| | ||||| ||||    
T  15821430 agtgatcagcccaccagactttagaaccaaatcagcagggcacccctcgccctcggtacaccagag-aacaccatatcaagccaaac-aggattgtagct 15821527  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcga--agtttaaacaa 198  Q
    || | || ||| |||||||| |||  |||  |||||||||| |  | |||| ||||||||||||||||| | ||||| |  ||| ||   ||  ||||||    
T  15821528 aggcaccaacttccgatctcaaagaaaaaataatcggcccaccagataccaacacacaatatgtaagacgatagacatgatatgtgattggtgcaaacaa 15821627  T
Q  199 caaacaaatcaaaaggaaaaggctcaaac 227  Q
    ||||| | ||| |||||||||||||||||    
T  15821628 caaaccagtcacaaggaaaaggctcaaac 15821656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 31207413 - 31207494
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtc 83  Q
    ||||||||| |||||||||||||| ||||||||||||||||| |||||||||  |||||||||||||||||||||| ||||||    
T  31207413 agtgatcggcccaccagactatagtaccaaattagcagggca-ccctcgcccctggtacaccagagaaaaaccaaatcaagtc 31207494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 17657053 - 17657222
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||  |||||| ||| |||  |||| |||| ||||||||||||  || ||||||| |||||||| |||||| || | |||| || ||||| ||||    
T  17657053 agtgatcgacccaccatactttaggtccaacttagaagggcacccctcatcc-cggtacatcagagaaacaccaaatcacgccaaataa-gattgtagct 17657150  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaa 172  Q
    || | |||||||||||||||||||| |||| || |||||||||| |||||| ||||||| | ||| ||||||    
T  17657151 agccaccgactcccgatctcgaagcaaaattaaccggcccatcggaaaccaacacacaaaaagtatgacaaa 17657222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 10552192 - 10552132
Alignment:
Q  109 actcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagaca 170  Q
    ||||||||||||||||| |||||| |||||||||| ||| ||||||||||||| ||||||||    
T  10552192 actcccgatctcgaagcaaaatga-tcggcccatcaaaatccagcacacaataagtaagaca 10552132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 16457512 - 16457572
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacacca 63  Q
    ||||||||| |||||| ||||||| | |||||||||||| ||||||||||||| |||||||||    
T  16457512 agtgatcgg-ccaccaaactatagtatcaaattagcaggacacccctcgccct-ggtacacca 16457572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 169
Target Start/End: Complemental strand, 35062390 - 35062321
Alignment:
Q  99 ctagaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagac 169  Q
    |||||| || ||||||||||||||||| |||||||| ||| ||||  || ||||||||||||| |||||||    
T  35062390 ctagacgccaactcccgatctcgaagcaaaatgaat-ggctcatcagaatccagcacacaataagtaagac 35062321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 38306291 - 38306067
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||    
T  38306291 agtgatcggcccaccagactatagtaccaaattagcagggcacccctcgccccctgtacaccagagaaaaaccaaatcaagtcaaacaaagattgcagct 38306192  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcgaagtttaaacaaca 200  Q
    ||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||    
T  38306191 agaccccgactcccgttctcgaagccaaatgaaccggcccaccgaaaaccagcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaaca 38306092  T
Q  201 aacaaatcaaaaggaaaaggctcaa 225  Q
    |||||||||||||||||||||||||    
T  38306091 aacaaatcaaaaggaaaaggctcaa 38306067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 4 - 225
Target Start/End: Original strand, 47325939 - 47326160
Alignment:
Q  4 gatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagctaga 103  Q
    |||||| |||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||| ||||||    
T  47325939 gatcggcccaccagactatagtaccaaattagcaaggcacccctcgcccccggtacaccagagaaaaaccaaatcaagttaaacaaagattgctgctaga 47326038  T
Q  104 ccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcgaagtttaaacaacaaac 203  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||| ||||||||||    
T  47326039 ccccgactcccgatctcgaagccaaatgaaccggcccatcgaaaaccagcacacaatatgtaagaagaaagacatggcatgcgaagtttgaacaacaaac 47326138  T
Q  204 aaatcaaaaggaaaaggctcaa 225  Q
    ||||||||||||||||||||||    
T  47326139 aaatcaaaaggaaaaggctcaa 47326160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 5 - 227
Target Start/End: Complemental strand, 25160841 - 25160619
Alignment:
Q  5 atcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagctagac 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||    
T  25160841 atcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaaaatagcaactagac 25160742  T
Q  105 cccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcgaagtttaaacaacaaaca 204  Q
    |||||||||||||| | ||||||||||||||  |||| |||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  25160741 cccgactcccgatcccaaagccaaatgaatcatcccaccgaaaaccagtacacaatatgtaagacaaaagacatggcatgcgtagtttaaacaacaaaca 25160642  T
Q  205 aatcaaaaggaaaaggctcaaac 227  Q
    |||||||||||| ||| ||||||    
T  25160641 aatcaaaaggaataggttcaaac 25160619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 3419707 - 3419931
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||| | |||||| ||| ||| ||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||    
T  3419707 agtgatcagcccaccacactttagtaccaaattaacagggcacccctcgcccccggtataccagagaaaaaccaaatcaagtcaaacaaagattgcagct 3419806  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcgaagtttaaacaaca 200  Q
    ||||||||||||||||||||||||||||||||| |||| |  ||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||    
T  3419807 agaccccgactcccgatctcgaagccaaatgaaccggctcgccgaaaaccagcacacaatatgtaagacgaaagacatggcatgtgaagtttaaacaaca 3419906  T
Q  201 aacaaatcaaaaggaaaaggctcaa 225  Q
    ||||||||||||||||| |||||||    
T  3419907 aacaaatcaaaaggaaagggctcaa 3419931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 11 - 225
Target Start/End: Original strand, 5860349 - 5860563
Alignment:
Q  11 ccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagctagaccccgac 110  Q
    ||||| |||||||| ||||||||||||||||||||||||||| |||||||  ||||||||||||||   || |||||||||||||||| |||||| ||||    
T  5860349 ccaccggactatagtaccaaattagcagggcacccctcgcccccggtacagtagagaaaaaccaaattcagccaaacaaagattgcagatagacctcgac 5860448  T
Q  111 tcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcgaagtttaaacaacaaacaaatcaa 210  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||  |||||||||||||||||||||||||||    
T  5860449 tcccgatctcgaagccaaatgaaccggcccatcgaaaaccagcacacaatatgtaagacgaaagacatggcgagcgaagtttaaacaacaaacaaatcaa 5860548  T
Q  211 aaggaaaaggctcaa 225  Q
    ||||| |||| ||||    
T  5860549 aaggagaaggttcaa 5860563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 10244212 - 10243992
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||| |||||||| ||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||| | | |||||||||||||||| ||    
T  10244212 agtgatcggcccaccagattatagcaccaaattagcagggcacccctctcccccggtacaccagagaaaaaccaaatcta-tcaaacaaagattgcaact 10244114  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcgaagtttaaacaaca 200  Q
    ||| ||||||||||||||||||||||||||||| | ||| | ||||||||||||||||||||||||||| ||| ||| |||||||||||||| |||||||    
T  10244113 agatcccgactcccgatctcgaagccaaatgaaccagccaaccgaaaaccagcacacaatatgtaagacgaaa-acatggcatgcgaagtttgaacaaca 10244015  T
Q  201 aacaaatcaaaaggaaaaggctcaaa 226  Q
    |||||   |||| |||||||||||||    
T  10244014 aacaa---aaaaagaaaaggctcaaa 10243992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 3867146 - 3866923
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||| | |||||| | | ||| |||||||||||||| ||||| |||||||||||||||||||||||||||| | |||||||||||||||||| ||||    
T  3867146 agtgatcagcccaccatattttagtaccaaattagcaggccacccttcgccctcggtacaccagagaaaaaccatatcaagtcaaacaaagattgtagct 3867047  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcgaagtttaaacaaca 200  Q
    |||||||||||| |||||||||||| |||  ||||| |||| || ||||||| |||||||||||||||| ||||||  |||||| |||||||||||||||    
T  3867046 agaccccgactctcgatctcgaagcaaaagtaatcgacccaccg-aaaccaggacacaatatgtaagacgaaagacgtggcatgtgaagtttaaacaaca 3866948  T
Q  201 aacaaatcaaaaggaaaaggctcaa 225  Q
    || ||||||||||||||||||||||    
T  3866947 aataaatcaaaaggaaaaggctcaa 3866923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 11 - 225
Target Start/End: Complemental strand, 37795009 - 37794807
Alignment:
Q  11 ccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagctagaccccgac 110  Q
    |||||| ||||||  ||||||||||||||||||||||||||| ||||||||||           || |||||||||||||||||||||||||||||| ||    
T  37795009 ccaccatactatattaccaaattagcagggcacccctcgcccccggtacacca-----------aatcaagtcaaacaaagattgcagctagaccccaac 37794921  T
Q  111 tcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcgaagtttaaacaacaaacaaatcaa 210  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||| |  |||||||||||||| |||||||||||||||||    
T  37794920 tcccgatctcgaagccaaatgaaccggcccaccgaaaaccagcacacaatatgtaaaacaaaagtc-cggcatgcgaagtttgaacaacaaacaaatcaa 37794822  T
Q  211 aaggaaaaggctcaa 225  Q
    |||||||| ||||||    
T  37794821 aaggaaaatgctcaa 37794807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 12 - 223
Target Start/End: Complemental strand, 33435128 - 33434918
Alignment:
Q  12 caccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagctagaccccgact 111  Q
    ||||||||| ||| ||||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||  ||||||||||| || |||||||| ||||    
T  33435128 caccagactttagtaccaaattaacagggcacccctcgcccccggtacaccagagaaaa-ccaaatcaagctaaacaaagattacaactagacccggact 33435030  T
Q  112 cccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcgaagtttaaacaacaaacaaatcaaa 211  Q
     ||||||||||||| |||  |||||||||| || |||||| |||||||||||||| || || |||| ||||||| ||||||||||||| |||  ||| ||    
T  33435029 accgatctcgaagcaaaagtaatcggcccaccggaaaccaacacacaatatgtaatacgaatgacatggcatgcaaagtttaaacaaccaacctatcgaa 33434930  T
Q  212 aggaaaaggctc 223  Q
    ||||||||||||    
T  33434929 aggaaaaggctc 33434918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 41089799 - 41089918
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    |||||||||||||||||||| ||| ||||||||||||| ||||||||||||| || |||||||||||||||||||| |||||||||||||||||| ||||    
T  41089799 agtgatcggtccaccagactttagtaccaaattagcagagcacccctcgcccccgatacaccagagaaaaaccaaatcaagtcaaacaaagattgtagct 41089898  T
Q  101 agaccccgactcccgatctc 120  Q
    ||||||| |||| |||||||    
T  41089899 agaccccaactctcgatctc 41089918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 16954683 - 16954459
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||||| |||||||| ||| ||||||| || |||||||||||| ||   | ||||||||||||| |||||| |  | | ||| ||||||||||||    
T  16954683 agtgatcggtcaaccagactttaggaccaaatcagaagggcacccctcacctctgatacaccagagaaagaccaaatcgcg-ccaaccaagattgcagct 16954585  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgc-gaagtttaaacaac 199  Q
    |||| || |||| |||||| ||||| |||  ||||||||||||| ||||||||||||| || ||| |||||| ||||||  |||| |  ||  |||||||    
T  16954584 agacaccaactctcgatctggaagcaaaagtaatcggcccatcggaaaccagcacacagtaagtatgacaaacgacaagatatgcagtggtgcaaacaac 16954485  T
Q  200 aaacaaatcaaaaggaaaaggctcaa 225  Q
    ||||| ||| ||||||||||||||||    
T  16954484 aaacatatccaaaggaaaaggctcaa 16954459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 44755656 - 44755500
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||| |||||||||| ||| ||||||| || |||||||||||| ||  |||||||||||||||| |||||| || |||||||||| || ||||||    
T  44755656 agtgatcggcccaccagactttaggaccaaatcagaagggcacccctcacca-cggtacaccagagaaacaccaaatcacgtcaaacaaa-atagcagct 44755559  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaa 159  Q
    |||| ||||||||||| ||| |||| |||| ||| |||||| ||  |||||||||||||    
T  44755558 agacaccgactcccgacctcaaagcaaaattaatgggcccaccgctaaccagcacacaa 44755500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 8745183 - 8745026
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||| |||||||| | ||| ||||||| || ||| |||||||| |||||||| ||||||||||| |||| | ||   |||||||  |||||||||    
T  8745183 agtgatcggcccaccagaatttaggaccaaatcagaaggccacccctcaccctcggtgcaccagagaaacaccagatcacaccaaacaac-attgcagct 8745085  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaa 159  Q
    |||| ||| || ||||||||||||| |||  || ||||||| |||||||||||||||||    
T  8745084 agacaccgccttccgatctcgaagcaaaagtaaccggcccaccgaaaaccagcacacaa 8745026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 177
Target Start/End: Original strand, 6716823 - 6716962
Alignment:
Q  37 agggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagctagaccccgactcccgatctcgaagccaaatgaatcg 136  Q
    |||||||||||| | |||||||||||||||||| | |||| |||| |||| || |||||||||||||| ||||||||||||||| |||  |||  ||  |    
T  6716823 agggcacccctcactctcggtacaccagagaaacatcaaatcaagccaaataa-gattgcagctagacaccgactcccgatctcaaagtaaaagtaactg 6716921  T
Q  137 gcccatcgaaaaccagcacacaatatgtaagacaaaagaca 177  Q
    ||||| ||||||||||||| ||| | |||||||||| ||||    
T  6716922 gcccaccgaaaaccagcacgcaaaaagtaagacaaatgaca 6716962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 34389992 - 34389771
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||| |||||||||| || |||||||| |||||||||| |||| ||| | ||||||||||| || |||| | |||||||||  | ||||||| ||    
T  34389992 agtgatcggcccaccagactttaaaaccaaatcagcagggcactcctcacccccagtacaccagag-aacaccatatcaagtcaaaacatgattgcaact 34389894  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcga--agtttaaacaa 198  Q
    |||| || ||| | ||||||||||| |||  ||  ||||||||  | |||||||||||||||||| ||| | ||||| |  ||||||   ||  ||||||    
T  34389893 agacaccaacttctgatctcgaagcaaaaataactggcccatcagacaccagcacacaatatgtacgacgatagacatgatatgcgattggtgcaaacaa 34389794  T
Q  199 caaacaaatcaaaaggaaaaggc 221  Q
    ||| ||||| |||||||||||||    
T  34389793 caagcaaatgaaaaggaaaaggc 34389771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 42533303 - 42533527
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||| | |||||||||| ||| ||||||| || |||||||||||| ||| || | ||||||||||| |||| | |  | |||| || || |||||||    
T  42533303 agtgatcagcccaccagactttaggaccaaatcaggagggcacccctcacccccgatgcaccagagaaacaccacatcgcgccaaataa-gaatgcagct 42533401  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgc-gaagtttaaacaa- 198  Q
     ||| | |||||||||||||||||| |||  || |||||||||| | |||||||||||| | ||| |||||| ||||||  || | |  ||  ||||||     
T  42533402 ggacacagactcccgatctcgaagcaaaagtaaccggcccatcggagaccagcacacaaaaagtatgacaaacgacaagagatacggtggtgcaaacaac 42533501  T
Q  199 caaacaaatcaaaaggaaaaggctca 224  Q
    ||||||||||||||||||||||||||    
T  42533502 caaacaaatcaaaaggaaaaggctca 42533527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 35745878 - 35746031
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||| | ||| |||||| |||||| ||||||| |||||||||||||||| ||||||| ||||| || |||| | |||||||||| |||||||| |||    
T  35745878 agtgatcagcccatcagactttagaacaaaattagtagggcacccctcgcccccggtacatcagag-aacaccatatcaagtcaaac-aagattgctgct 35745975  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcaca 156  Q
    || | || ||| ||||||||||||| |||  || ||| ||| ||||||||| ||||    
T  35745976 agtcaccaacttccgatctcgaagcaaaagtaaccggtccaccgaaaaccaacaca 35746031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 6584939 - 6584877
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacacca 63  Q
    ||||||||| |||||||||| ||||||||||| ||||||||||||||||||  ||||||||||    
T  6584939 agtgatcggcccaccagactttagaaccaaatcagcagggcacccctcgcctccggtacacca 6584877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 16828999 - 16829164
Alignment:
Q  13 accagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagctagaccccgactc 112  Q
    |||||||| ||| ||||||| || |||||||||||| |||  | ||||| ||||||| |||||| |  | | ||| |||||||||| ||||| || ||||    
T  16828999 accagactttaggaccaaatcagaagggcacccctcacccctgatacactagagaaacaccaaatcgcg-ccaaccaagattgcaggtagacaccaactc 16829097  T
Q  113 ccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaag 179  Q
     | |||| ||||| |||  ||||| ||||||| |||||||||||||||| ||  |||||| ||||||    
T  16829098 tcaatctggaagcaaaagtaatcgacccatcggaaaccagcacacaataagtttgacaaacgacaag 16829164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 1320824 - 1320701
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||| |||||||||| ||  ||||||| |  |||||||||||| ||| || |||| |||||||| ||||||    | |||||||| ||| |||||    
T  1320824 agtgatcggcccaccagactttatgaccaaatcaaaagggcacccctcacccccgatacatcagagaaacaccaaattgcgccaaacaaa-attacagct 1320726  T
Q  101 agaccccgactcccgatctcgaagc 125  Q
    |||| || |||||||||||||||||    
T  1320725 agacaccaactcccgatctcgaagc 1320701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 13311869 - 13311700
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||| ||||||||||| |  ||||||  ||  ||||||||||   || |||| ||||||||||| | | ||   |||||||  |||| ||||| |    
T  13311869 agtgatcggcccaccagactacatgaccaaaccagacgggcaccccttatccccggtccaccagagaaacaacgaagtcagtcaaaataagaatgcagtt 13311770  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagaca 170  Q
    |||| || ||||||||||||||||  |||  | |||||||| |  || ||||||||||| ||||||||||    
T  13311769 agacaccaactcccgatctcgaaggaaaagtactcggcccaccagaatccagcacacaaaatgtaagaca 13311700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 170
Target Start/End: Complemental strand, 38485476 - 38485420
Alignment:
Q  113 ccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagaca 170  Q
    |||| |||||||| |||||| |||||||||| ||| ||||||||||||| ||||||||    
T  38485476 ccgaactcgaagcaaaatga-tcggcccatcaaaatccagcacacaataagtaagaca 38485420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 30964471 - 30964247
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||| ||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30964471 agtgatcggcccatcagattatagtaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaatcaagtcaaacaaagattgcagct 30964372  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcgaagtttaaacaaca 200  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||    
T  30964371 agaccccgacttccgatctcgaagccaaatgaaccggcccatcgaaaaccagcacacaataagtaagacgaaagacatggcatgcgaagtttaaacaaca 30964272  T
Q  201 aacaaatcaaaaggaaaaggctcaa 225  Q
    |||||||||||||||||||| ||||    
T  30964271 aacaaatcaaaaggaaaaggttcaa 30964247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 8255057 - 8254833
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||| |||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| |||||    
T  8255057 agtgatcggcccaccagactttagtaccaaattagcagggcacccctcgcccccggtacaccagagaaaaaccaaatcaagtgaaacaaagattacagct 8254958  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcgaagtttaaacaaca 200  Q
    ||||| ||||||||||||||||||||||| ||| ||||||| ||||||||| ||||||||||||||||| ||||||| ||||||| ||||||||||||||    
T  8254957 agacctcgactcccgatctcgaagccaaaagaaccggcccaccgaaaaccaacacacaatatgtaagacgaaagacatggcatgcaaagtttaaacaaca 8254858  T
Q  201 aacaaatcaaaaggaaaaggctcaa 225  Q
    ||| |||||||||||||||||||||    
T  8254857 aacgaatcaaaaggaaaaggctcaa 8254833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 8268475 - 8268251
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||| |||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| |||||    
T  8268475 agtgatcggcccaccagactttagtaccaaattagcagggcacccctcgcccccggtacaccagagaaaaaccaaatcaagtgaaacaaagattacagct 8268376  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcgaagtttaaacaaca 200  Q
    ||||| ||||||||||||||||||||||| ||| ||||||| ||||||||| ||||||||||||||||| ||||||| ||||||| ||||||||||||||    
T  8268375 agacctcgactcccgatctcgaagccaaaagaaccggcccaccgaaaaccaacacacaatatgtaagacgaaagacatggcatgcaaagtttaaacaaca 8268276  T
Q  201 aacaaatcaaaaggaaaaggctcaa 225  Q
    ||| |||||||||||||||||||||    
T  8268275 aacgaatcaaaaggaaaaggctcaa 8268251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 4305755 - 4305531
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||  |||||||||||||| ||||||||||||||||||| || |||| ||||||||||||||||||| ||| | |||||||||||||||||| ||    
T  4305755 agtgatcgccccaccagactatagtaccaaattagcagggcaccgcttgcccccggtacaccagagaaaaacgaaatccagtcaaacaaagattgcaact 4305656  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcgaagtttaaacaaca 200  Q
    || |||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||    
T  4305655 agcccccgactcccgatctcgaagccaaatgaaccggcccaccgaaaaccagtacacaatatgtaagacaaaagacatggcaagcgaagtttaaacaaca 4305556  T
Q  201 aacaaatcaaaaggaaaaggctcaa 225  Q
    |||||| | ||||||||||||||||    
T  4305555 aacaaaactaaaggaaaaggctcaa 4305531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 171
Target Start/End: Complemental strand, 2825811 - 2825646
Alignment:
Q  3 tgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagctag 102  Q
    ||||||| ||||| |||| ||||||||||| ||||| ||||||||||||||||||||||||||| || |||| | |||||||||| | ||||||||||||    
T  2825811 tgatcggcccaccggactttagaaccaaatcagcagagcacccctcgccctcggtacaccagag-aacaccatatcaagtcaaac-atgattgcagctag 2825714  T
Q  103 accccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaa 171  Q
    || || |||| | |||||||||| ||   |||||||||| || | | || |||||||||||||||||||    
T  2825713 acaccaactctcaatctcgaagcaaatataatcggcccaccggaca-caacacacaatatgtaagacaa 2825646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 25753202 - 25753027
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||  |||||||||| ||| ||||||| ||  |||||| |||| ||  |||||||||||||||| |||| | || | ||||||| ||||||||||    
T  25753202 agtgatcgccccaccagactttaggaccaaataagacgggcactcctcacctccggtacaccagagaaacaccacatcacgccaaacaa-gattgcagct 25753104  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagaca 177  Q
    |||| |||||||||||||||||||| |||| || | |||||||| ||||||||| |||| | ||||| |||| ||||    
T  25753103 agacaccgactcccgatctcgaagcaaaattaagctgcccatcggaaaccagcaaacaaaaagtaaggcaaacgaca 25753027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 31050713 - 31050880
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||| |||||||||| ||||||||||| || |||||||||||||||| ||||||| || || || |||| | |||||||||| | ||||||||||    
T  31050713 agtgatcggcccaccagactttagaaccaaatcagtagggcacccctcgcccccggtacatcaaag-aacaccatatcaagtcaaac-aggattgcagct 31050810  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagaca 170  Q
    || | |||||||||| ||||||||| |||  || ||||||| || |||||| |||| |||| | ||||||    
T  31050811 agtcaccgactcccggtctcgaagcaaaagtaaccggcccaccggaaaccaacacataataagcaagaca 31050880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 53823472 - 53823595
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    |||||| ||||||||||||| ||  ||||||| || |||||||||||| ||  |||||||||||||||| |||||  |||| ||| | |||||||||| |    
T  53823472 agtgattggtccaccagactttatgaccaaatcagaagggcacccctcacctccggtacaccagagaaacaccaagtcaagccaagc-aagattgcagtt 53823570  T
Q  101 agaccccgactcccgatctcgaagc 125  Q
    |||| ||||||||||||||||||||    
T  53823571 agacaccgactcccgatctcgaagc 53823595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 39421064 - 39421187
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||| ||||||| |||||  |||| || || |||||||||||| ||||| |||||  ||||||| |||||| || | ||||| ||||||||||||    
T  39421064 agtgatcggcccaccaggctataagaccatatcagaagggcacccctcaccctcagtacattagagaaacaccaaatcacgccaaac-aagattgcagct 39421162  T
Q  101 agaccccgactcccgatctcgaagc 125  Q
    |||| |||| |||||||||||||||    
T  39421163 agacaccgattcccgatctcgaagc 39421187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 30167631 - 30167736
Alignment:
Q  17 gactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagctagaccccgactcccga 116  Q
    |||||||  |||||||  |||||||||||||| ||| ||| ||| || |||||| | ||| ||| |||||||||||||| ||||||||||||||||||||    
T  30167631 gactataataccaaataggcagggcacccctcaccc-cggcacatcaaagaaaacctaaatcaaatcaaacaaagattgtagctagaccccgactcccga 30167729  T
Q  117 tctcgaa 123  Q
    |||||||    
T  30167730 tctcgaa 30167736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 125
Target Start/End: Original strand, 19815279 - 19815398
Alignment:
Q  5 atcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagctagac 104  Q
    |||||||||||||||| ||| ||||||  || |||||||||||| ||| ||||  |||||| ||| || | | |||| ||||||| ||||||||||||||    
T  19815279 atcggtccaccagactttaggaccaaaacagaagggcacccctcacccccggtcaaccagaaaaatacaatatcaagccaaacaa-gattgcagctagac 19815377  T
Q  105 cccgactcccgatctcgaagc 125  Q
     ||||||| ||||||||||||    
T  19815378 accgactctcgatctcgaagc 19815398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 170
Target Start/End: Complemental strand, 12296118 - 12296037
Alignment:
Q  89 aagattgcagctagaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagaca 170  Q
    |||| ||||||||||| || ||||||||||||||||| |||  |||||||||| |  || ||||||||||||||||||||||    
T  12296118 aagaatgcagctagacgccaactcccgatctcgaagcaaaagtaatcggcccaccagaatccagcacacaatatgtaagaca 12296037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 19673124 - 19673008
Alignment:
Q  8 ggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagctagacccc 107  Q
    ||||||||||||| ||| ||||||  || |||||||||||| ||| || |  |||||||||| | || | |||| ||||||| |||||||||||||| |     
T  19673124 ggtccaccagactttaggaccaaaacagaagggcacccctcacccccgatcaaccagagaaatatcatatcaagccaaacaa-gattgcagctagacact 19673026  T
Q  108 gactcccgatctcgaagc 125  Q
    ||||||||||||||||||    
T  19673025 gactcccgatctcgaagc 19673008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 159
Target Start/End: Original strand, 22811213 - 22811367
Alignment:
Q  3 tgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagctag 102  Q
    ||||||| |||||||||| ||  ||||||| || ||||||| |||| ||| || ||||||||||||| |||||| ||   |||||||| |||||| ||||    
T  22811213 tgatcggcccaccagactttaagaccaaatcagaagggcactcctcaccc-cgatacaccagagaaacaccaaatcacaccaaacaaa-attgcaactag 22811310  T
Q  103 accccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaa 159  Q
    || || | | ||||||||||||| |||  || || |||| |||||||||||||||||    
T  22811311 acaccaagttccgatctcgaagcaaaagtaaccgacccaccgaaaaccagcacacaa 22811367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 170
Target Start/End: Original strand, 46698923 - 46699003
Alignment:
Q  89 aagattgcagctagaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagaca 170  Q
    |||| ||||||||||| || ||||||||||||||||| |||  |||||||||| |  || ||||||||||||||||||||||    
T  46698923 aagactgcagctagacaccaactcccgatctcgaagcaaaagtaatcggccca-cagaatccagcacacaatatgtaagaca 46699003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 46698840 - 46698904
Alignment:
Q  5 atcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaa 69  Q
    ||||| ||||||||||| || ||||||| || |||||||||| | |||||||| ||||| |||||    
T  46698840 atcggcccaccagactacaggaccaaatcagaagggcaccccacaccctcggtccaccaaagaaa 46698904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 41920482 - 41920259
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||| |||||||||| ||| ||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||    
T  41920482 agtgatcggcccaccagactgtagtaccaaattagcagggcacccctcgccc-cagtacaccagagaaaaaccaaatcaagtcaaacaaagattgcagct 41920384  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcgaagtttaaacaaca 200  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  41920383 agaccccgactcccgatctcgaagccaaatgaaccggcccaccgaaaactagcacacaatatgtaagacgaaagacatggcatgcgaagtttaaacaaca 41920284  T
Q  201 aacaaatcaaaaggaaaaggctcaa 225  Q
    |||||||||||||||||||||||||    
T  41920283 aacaaatcaaaaggaaaaggctcaa 41920259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 31585811 - 31586035
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  31585811 agtgatcggcccaccagactatagtaccaaattagcagggcacccctcaccctcagtacaccagagaaaaaccaaatcaagtcaaacaaagattgcagct 31585910  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcgaagtttaaacaaca 200  Q
    ||||||||||||||||||||||||||||||||| ||||||| | |||| ||||| ||| |||||||||| ||||||| ||||||||||||||||||||||    
T  31585911 agaccccgactcccgatctcgaagccaaatgaaccggcccaccaaaaatcagcaaacactatgtaagacgaaagacatggcatgcgaagtttaaacaaca 31586010  T
Q  201 aacaaatcaaaaggaaaaggctcaa 225  Q
    |||||||||||||||||||||||||    
T  31586011 aacaaatcaaaaggaaaaggctcaa 31586035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 24449981 - 24450205
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||| |||||| ||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24449981 agtgatcggcccaccaaactatagtaccaaaatagcagggcacccctcgcccccggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 24450080  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcgaagtttaaacaaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||| ||| ||||||||||||| ||||    
T  24450081 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccaacacataatatgtaagacgaaagacatggcgtgcgaagtttaaataaca 24450180  T
Q  201 aacaaatcaaaaggaaaaggctcaa 225  Q
    |||||||| |||||| ||| |||||    
T  24450181 aacaaatccaaaggacaagactcaa 24450205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 46692870 - 46693094
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||| |||||||||||||  ||||||||||||||||||| ||||||| |||||||||||||||||| |||| |||||||||||||||||||| ||    
T  46692870 agtgatcggcccaccagactatatcaccaaattagcagggcacctctcgcccccggtacaccagagaaaaatcaaatcaagtcaaacaaagattgcaact 46692969  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcgaagtttaaacaaca 200  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||| ||||||| |||||||    
T  46692970 agacctcgactcccgatctcgaagccaaatgaatcggcccaccgaaaactagcacacaatatgtaagacaaaagacatggcatgtgaagtttgaacaaca 46693069  T
Q  201 aacaaatcaaaaggaaaaggctcaa 225  Q
    |||||||||||| ||||||||||||    
T  46693070 aacaaatcaaaaagaaaaggctcaa 46693094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 5389472 - 5389693
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||| ||  |||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||    
T  5389472 agtgatcggcccttcagactatagtaccaaattagctgggcacccctcgcccccggtacaccagagaaaaatcaaatcaagtcaaacaaagattgcagct 5389571  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcgaagtttaaacaaca 200  Q
    |||||| |||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||    
T  5389572 agacccggactcccgatctcgaagccaaatgaaccggcccactgaaaaccagcacacaatatgtaagatgaaagacatggcatgcgaagtttaaacaaca 5389671  T
Q  201 aacaaatcaaaaggaaaaggct 222  Q
    ||||||||||||||||||||||    
T  5389672 aacaaatcaaaaggaaaaggct 5389693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 30685955 - 30686179
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||| |||| ||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||| |||||||| |    
T  30685955 agtgatcggcccacaagactatagtaccaaattagcagggcacccctcgccccaggtacaccagagaaaaaccaaatcaagtcaaacaaggattgcagtt 30686054  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcgaagtttaaacaaca 200  Q
    ||||| ||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||| |||||||||| | |||||||||||||||||    
T  30686055 agacctcgactcccgatctcgaagccaaatgaaccggcccaccgaaaaccaacacacaatatgtaagacgaaagacaaggtaagcgaagtttaaacaaca 30686154  T
Q  201 aacaaatcaaaaggaaaaggctcaa 225  Q
    |||| ||||||||||||||||||||    
T  30686155 aacagatcaaaaggaaaaggctcaa 30686179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 24684529 - 24684750
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||| |||||||||| ||||| |||||||| |||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||    
T  24684529 agtgatcggcccaccagactttagaatcaaattagtagggcacccctcgcccccggtacaccagagaaaa-ccaaatcaagtcaaacaaagattacagct 24684627  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcgaagtttaaacaaca 200  Q
    |||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||    
T  24684628 agaccccgactcccgatctcgaagccaaatgaattggcc-accgaaaaccagcacacaatatgtaagacgaaagacatggcatgcgaagtttaaccaaca 24684726  T
Q  201 aacaaatcaaaaggaaaaggctca 224  Q
     |||||||| ||||||||||||||    
T  24684727 gacaaatcacaaggaaaaggctca 24684750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 15 - 225
Target Start/End: Original strand, 20113586 - 20113796
Alignment:
Q  15 cagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagctagaccccgactccc 114  Q
    |||||||||  ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||  || ||||||||||||||||||||||||||||||    
T  20113586 cagactataataccaaattagcagggcacccctcgcccccggtacacccgagaaaaaccaaaccatatctaacaaagattgcagctagaccccgactccc 20113685  T
Q  115 gatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcgaagtttaaacaacaaacaaatcaaaagg 214  Q
    ||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||  ||||||| ||||||| ||||||||||||||||||||||||||||    
T  20113686 gatctcgaagccaaatgaaccggcccaccgaaaactagcacacaatatgtaagatgaaagacatggcatgcaaagtttaaacaacaaacaaatcaaaagg 20113785  T
Q  215 aaaaggctcaa 225  Q
    ||||| |||||    
T  20113786 aaaagcctcaa 20113796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 7857683 - 7857517
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||| |||||||||| ||||||||||| ||||||||||||||||||| | ||||||||||||| || || | ||||||||||| | |||||| ||    
T  7857683 agtgatcggcccaccagactttagaaccaaatcagcagggcacccctcgcccccagtacaccagagaacaa-catatcaagtcaaacata-attgcaact 7857586  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagac 169  Q
    |||| || ||||||||||||||||| |||  ||||||||||  | ||||||||||||||||||||||||    
T  7857585 agacaccaactcccgatctcgaagcaaaaataatcggcccactggaaaccagcacacaatatgtaagac 7857517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 24658959 - 24658793
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    |||||| || |||||||||| ||||||||||| |||||||||||||| |||| || |||||||||| || |||| | |||||||||| | ||||||||||    
T  24658959 agtgattggcccaccagactttagaaccaaatcagcagggcaccccttgcccccgatacaccagag-aacaccatatcaagtcaaac-atgattgcagct 24658862  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagac 169  Q
    |||| || ||||||||||| ||||| |||  || ||||||| || |  ||||||||||| |||||||||    
T  24658861 agacaccaactcccgatcttgaagcaaaaataaccggcccaccggactccagcacacaaaatgtaagac 24658793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 46814518 - 46814674
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||| |||||||||| ||||||||||| |||||||||||||| |||| ||||||||||||| || |||| | |||||||||| | ||||||| ||    
T  46814518 agtgatcggcccaccagactttagaaccaaatcagcagggcaccccttgcccccggtacaccagag-aacaccatatcaagtcaaac-aggattgcaact 46814615  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaa 159  Q
    |||| || |||| |||||||||| | |||  || |||||||||| | ||||||| ||||    
T  46814616 agacaccaactctcgatctcgaatcaaaaataaccggcccatcggacaccagcaaacaa 46814674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 9313340 - 9313463
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||| | |||| ||||| ||| ||||||| || |||||||||||| | | || ||||| ||||||| |||||| || | |||||||| |||||||||    
T  9313340 agtgatcagcccactagactttaggaccaaatcagaagggcacccctcacgcccgatacacgagagaaacaccaaatcacggcaaacaaa-attgcagct 9313438  T
Q  101 agaccccgactcccgatctcgaagc 125  Q
    |||| || |||||||||||||||||    
T  9313439 agacaccaactcccgatctcgaagc 9313463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 5459191 - 5459133
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtac 59  Q
    ||||||||| |||||||||||||| ||||||||||||||| ||||||||||| ||||||    
T  5459191 agtgatcggcccaccagactatagcaccaaattagcagggtacccctcgcccccggtac 5459133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 177
Target Start/End: Original strand, 38544846 - 38544963
Alignment:
Q  59 caccagagaaaaaccaaaccaagtcaaacaaagattgcagctagaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacaca 158  Q
    ||||||||||| ||||||   | |||||||| |||||||||||||| || |||||| |||||||||| |||  ||||||||||    || ||||||||||    
T  38544846 caccagagaaacaccaaaatcaatcaaacaa-gattgcagctagacaccaactcccaatctcgaagcaaaagtaatcggcccactagaatccagcacaca 38544944  T
Q  159 atatgtaagacaaaagaca 177  Q
    |||||||||||||| ||||    
T  38544945 atatgtaagacaaacgaca 38544963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 32864612 - 32864789
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    |||||| || ||||||| || ||| |||||||  | |||||||||||| ||||| ||| | |||| ||| ||||||  ||| ||||  ||||||| ||||    
T  32864612 agtgattggcccaccagcctttaggaccaaatcggaagggcacccctcaccctcagtagatcagataaacaccaaataaagccaaaacaagattgtagct 32864711  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatc-gaaaaccagcacacaatatgtaagacaaaagaca 177  Q
    |||| |||||||| ||| ||||||| |||  || ||||||| | |||||| ||||||||| | ||| |||||||||||    
T  32864712 agacaccgactcctgatttcgaagcaaaagtaaccggcccaccggaaaactagcacacaaaacgtatgacaaaagaca 32864789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 27031891 - 27031958
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaa 68  Q
    ||||||||| |||| ||||| ||||||||||| ||||||||||||||  ||| |||||||||||||||    
T  27031891 agtgatcggcccactagactttagaaccaaatcagcagggcacccctttcccccggtacaccagagaa 27031958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 177
Target Start/End: Complemental strand, 16147549 - 16147410
Alignment:
Q  37 agggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagctagaccccgactcccgatctcgaagccaaatgaatcg 136  Q
    |||| ||| ||| ||| |||||| | ||||||| |||||| |||| ||||||| ||||||||||||||   ||||||||||||||||   |||  |||||    
T  16147549 agggaacctctcacccccggtacgctagagaaacaccaaatcaagccaaacaa-gattgcagctagacagtgactcccgatctcgaactaaaagtaatcg 16147451  T
Q  137 gcccatcgaaaaccagcacacaatatgtaagacaaaagaca 177  Q
    ||||| || || | | ||||||||| |||||||||| ||||    
T  16147450 gcccaccggaacctaacacacaataagtaagacaaatgaca 16147410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 34774901 - 34774779
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    |||||||||||||||||||  ||| ||||||| || |||||||| ||| ||| | ||| || ||||||| | |||| |||| ||||| ||||||| || |    
T  34774901 agtgatcggtccaccagacgttaggaccaaatcagaagggcaccactcaccc-ccgtatactagagaaacatcaaatcaagccaaac-aagattgtagtt 34774804  T
Q  101 agaccccgactcccgatctcgaagc 125  Q
    |||| |||||||||| |||||||||    
T  34774803 agacaccgactcccgttctcgaagc 34774779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 170
Target Start/End: Original strand, 50589349 - 50589424
Alignment:
Q  95 gcagctagaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagaca 170  Q
    |||||||||| || | ||||||||||||||| |||| || ||||||| |  || ||||||||||||||||||||||    
T  50589349 gcagctagacgccaagtcccgatctcgaagcaaaattaaccggcccaccagaatccagcacacaatatgtaagaca 50589424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 159
Target Start/End: Original strand, 6583333 - 6583399
Alignment:
Q  93 ttgcagctagaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaa 159  Q
    |||||||||||| |||||||||||||||||||| |||  || ||||||| ||| ||||| |||||||    
T  6583333 ttgcagctagacaccgactcccgatctcgaagcaaaagtaaccggcccaccgacaaccaacacacaa 6583399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 17033616 - 17033439
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||| |||||||||||||| ||||||| || ||||||||||   | |||||| ||||| ||||  |||  |   || ||||| ||||||||| ||    
T  17033616 agtgatcggcccaccagactataggaccaaatcagaagggcaccccctactctcggttcaccatagaatcaccgtagtcagccaaac-aagattgcaact 17033518  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaag 179  Q
    |||| || | || |||||||||| | |||  || ||||||| |  || ||||||||||||| |||||||||| ||||||    
T  17033517 agacgccaattctcgatctcgaaacaaaagtaaccggcccaccagaatccagcacacaataagtaagacaaacgacaag 17033439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 10785489 - 10785553
Alignment:
Q  108 gactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaa 172  Q
    |||||||||||||||||| |||| || ||||||| || ||||||||||||||   ||||||||||    
T  10785489 gactcccgatctcgaagcaaaattaaccggcccaccggaaaccagcacacaaacagtaagacaaa 10785553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 169
Target Start/End: Original strand, 27032024 - 27032080
Alignment:
Q  113 ccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagac 169  Q
    ||||||||||||| |||  |||||||| |||| | ||||||||||||||||||||||    
T  27032024 ccgatctcgaagcaaaaataatcggccgatcggacaccagcacacaatatgtaagac 27032080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 120
Target Start/End: Complemental strand, 27102178 - 27102102
Alignment:
Q  43 cccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagctagaccccgactcccgatctc 120  Q
    |||||| |||||||||||||||||||| |||||| || | ||||  ||||||||||| |||| |||||| || |||||    
T  27102178 cccctcaccctcggtacaccagagaaacaccaaatcacgccaaa-taagattgcagccagacaccgacttccaatctc 27102102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 6583267 - 6583319
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccct 53  Q
    |||||||||||||||||||| ||| ||||||| || | |||||||||| ||||    
T  6583267 agtgatcggtccaccagactttaggaccaaatcagaaaggcacccctcaccct 6583319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 4 - 225
Target Start/End: Original strand, 39338919 - 39339140
Alignment:
Q  4 gatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagctaga 103  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||| ||||||||||||    
T  39338919 gatcggcccaccagactatagtaccaaattagcagggcacccctcgcccccggtacaccaaagaaaaaccaaatcaagtcaaacaaatattgcagctaga 39339018  T
Q  104 ccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcgaagtttaaacaacaaac 203  Q
    ||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||| ||||    
T  39339019 ccccgactcccgatctcgaagccaaatgaactggcccaccgaaaaccagcacacaatatgtaagacgaaagacatggcatgcgaagtttgaacaataaac 39339118  T
Q  204 aaatcaaaaggaaaaggctcaa 225  Q
    ||||||||||||||||||||||    
T  39339119 aaatcaaaaggaaaaggctcaa 39339140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 10524127 - 10523903
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||| |||||||||||||| |||||||| |||||||||| ||||||| | ||| ||||||||||||||||| |||||||||||||||||||| ||    
T  10524127 agtgatcggcccaccagactatagcaccaaattggcagggcacctctcgcccccagtagaccagagaaaaaccaaatcaagtcaaacaaagattgcaact 10524028  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcgaagtttaaacaaca 200  Q
    ||| ||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||  ||||||| |||||||||| ||| |||||||    
T  10524027 agagcccgactcccgatctcgaagccaaatgaaccggtccaccgaaaaccagcacacaatatgtaagatgaaagacatggcatgcgaaatttgaacaaca 10523928  T
Q  201 aacaaatcaaaaggaaaaggctcaa 225  Q
    |||||||||||| ||||||||||||    
T  10523927 aacaaatcaaaaagaaaaggctcaa 10523903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 7874321 - 7874095
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||  |||||||||| ||||||||||| |||||||||||| ||||||||||||||| |||| || |||| | |||||||| | | ||||||||||    
T  7874321 agtgatcgacccaccagactttagaaccaaatcagcagggcacccatcgccctcggtacactagag-aacaccatatcaagtcaagc-aggattgcagct 7874224  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcga--agtttaaacaa 198  Q
    |||| || ||||||||||||||||| |||  || ||||||| || | ||||||||||||||| |||||| | ||||| |  ||||||   ||  ||||||    
T  7874223 agacaccaactcccgatctcgaagcaaaaaaaaccggcccaccggacaccagcacacaatatttaagacgatagacatgatatgcgattggtgcaaacaa 7874124  T
Q  199 caaacaaatcaaaaggaaaaggctcaaac 227  Q
    ||||| | ||| ||||||||| |||||||    
T  7874123 caaaccagtcacaaggaaaagactcaaac 7874095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 14106575 - 14106743
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||| |||||||||| ||| ||||||| |||||||||||||||||||| ||||||  |||| || |||||| |||||||||| | ||||||||||    
T  14106575 agtgatcggcccaccagactttaggaccaaatcagcagggcacccctcgccctgggtacatgagaggaacaccaaatcaagtcaaac-aggattgcagct 14106673  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagaca 170  Q
    || | |||||||||  ||||||||| |||  || ||||||| || |||||| ||||||||| | ||||||    
T  14106674 agtcaccgactccctgtctcgaagcaaaagtaaccggcccaccggaaaccaacacacaataagcaagaca 14106743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 17105441 - 17105218
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||| ||| ||||||  || ||||||| || |||||||||||| |||  ||||||||| ||||| ||| ||  ||||||||||| | ||||||||    
T  17105441 agtgatcggcccatcagacttcagtaccaaatcagtagggcacccctcacccctggtacaccaaagaaacacctaattaagtcaaacaagg-ttgcagct 17105343  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcga-agtttaaacaac 199  Q
    |||| ||||||||  ||||| |||| |||  || || |||| || |||||||||||||||||||||||  ||||||| |  ||| ||  ||  ||||| |    
T  17105342 agacgccgactccttatctccaagcaaaagtaaccgacccaccggaaaccagcacacaatatgtaagatgaaagacatgatatgagatggtgcaaacacc 17105243  T
Q  200 aaacaaatcaaaaggaaaaggctca 224  Q
    |||||||||||||||||||||||||    
T  17105242 aaacaaatcaaaaggaaaaggctca 17105218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 1269513 - 1269337
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||| |||||||||| ||| || |||| || |||||||||||| || | |||| |||||||||| | ||||  ||| ||||  |||| |||||||    
T  1269513 agtgatcggcccaccagactttaggactaaatcagaagggcacccctcacctttggtataccagagaaacatcaaattaagccaaaacaagaatgcagct 1269414  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagaca 177  Q
    ||||  ||||||||||||||||||| |||| || || |||||||  |||||||| ||||   |||||||||| ||||    
T  1269413 agacatcgactcccgatctcgaagcaaaattaaccgacccatcgggaaccagcatacaaacagtaagacaaacgaca 1269337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 387203 - 387129
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaa 76  Q
    ||||||| | |||||||||| ||| ||||||||||||||||||||||||||| ||||  |||||||||||||||||    
T  387203 agtgatcagcccaccagactttagtaccaaattagcagggcacccctcgccc-cggtgtaccagagaaaaaccaaa 387129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 37770692 - 37770849
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||| |||||| ||  ||| ||||||| ||  ||||||||||| |||||||||||||||||||| || ||| |  | ||||   | ||||| |||    
T  37770692 agtgatcggcccaccaaaccttaggaccaaatcagatgggcacccctcaccctcggtacaccagagaaacactaaatcgcgccaaatcga-attgctgct 37770790  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaa 159  Q
    |||| || ||||||||||||||||| |||  || ||||||| ||| |||||||| ||||    
T  37770791 agacaccaactcccgatctcgaagcaaaagtaaccggcccaccgataaccagcaaacaa 37770849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 179
Target Start/End: Original strand, 41086849 - 41087014
Alignment:
Q  11 ccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagctagaccccgac 110  Q
    |||||||||||||  ||||||| || |||||| ||||| |||  |||||||||||| || |||||| || | |||||||| |||| |||| ||| ||||     
T  41086849 ccaccagactatatgaccaaatcagaagggca-ccctcacccctggtacaccagag-aacaccaaatcacgccaaacaaa-attgtagctggacaccgat 41086945  T
Q  111 tcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaag 179  Q
    |||||||||| |||| |||  |||||| ||| || ||||| |||||||| | ||| |||||| ||||||    
T  41086946 tcccgatctcaaagcaaaagtaatcggtccaccggaaacctgcacacaacaagtaggacaaacgacaag 41087014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 14405228 - 14405162
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaa 68  Q
    ||||||||| |||||||||| ||||||||||| | || | |||||||||||| |||||||||||||||    
T  14405228 agtgatcggcccaccagactttagaaccaaatcatcaag-cacccctcgcccccggtacaccagagaa 14405162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 16952570 - 16952608
Alignment:
Q  139 ccatcgaaaaccagcacacaatatgtaagacaaaagaca 177  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  16952570 ccatcgaaaaccagcacacaatatgtaagacaaatgaca 16952608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 17023235 - 17023273
Alignment:
Q  139 ccatcgaaaaccagcacacaatatgtaagacaaaagaca 177  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  17023235 ccatcgaaaaccagcacacaatatgtaagacaaatgaca 17023273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 17060541 - 17060579
Alignment:
Q  139 ccatcgaaaaccagcacacaatatgtaagacaaaagaca 177  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  17060541 ccatcgaaaaccagcacacaatatgtaagacaaatgaca 17060579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 17079063 - 17079025
Alignment:
Q  139 ccatcgaaaaccagcacacaatatgtaagacaaaagaca 177  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  17079063 ccatcgaaaaccagcacacaatatgtaagacaaatgaca 17079025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 225
Target Start/End: Complemental strand, 7695906 - 7695874
Alignment:
Q  193 aaacaacaaacaaatcaaaaggaaaaggctcaa 225  Q
    |||||||||||| ||||||||||||||||||||    
T  7695906 aaacaacaaacatatcaaaaggaaaaggctcaa 7695874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 4 - 225
Target Start/End: Complemental strand, 698388 - 698167
Alignment:
Q  4 gatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagctaga 103  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  698388 gatcggtccaccagactatagcaccaaattagcagggcacccctcgcccccggtacaccagagaaaaaccaaatcaagtcaaacaaagattgcaactaga 698289  T
Q  104 ccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcgaagtttaaacaacaaac 203  Q
    ||| |||||||||||||||||||||||||| |||||||   ||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||    
T  698288 ccctgactcccgatctcgaagccaaatgaaccggcccactaaaaaccagcacacaatatgtaagacgaaagacatggcatgcgaagtttgaacaacaaac 698189  T
Q  204 aaatcaaaaggaaaaggctcaa 225  Q
    | ||||||| ||||||||||||    
T  698188 atatcaaaaagaaaaggctcaa 698167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 18593273 - 18593049
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||| | |||| | ||||||| ||||||||||||||||| ||||||||| |||||||| |||||||||||||| |||||||||||||||||||| ||    
T  18593273 agtgatctgcccactaaactatagcaccaaattagcagggcatccctcgcccccggtacacgagagaaaaaccaaatcaagtcaaacaaagattgcaact 18593174  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcgaagtttaaacaaca 200  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||| || ||||||| |||||||||||||| |||||||    
T  18593173 agaccccgactcccgatctcgaagccaaatgaaccggcccaccgaaaatcagcacacaatatgtaaaacgaaagacatggcatgcgaagtttgaacaaca 18593074  T
Q  201 aacaaatcaaaaggaaaaggctcaa 225  Q
    |||||||||||| ||||||||||||    
T  18593073 aacaaatcaaaaagaaaaggctcaa 18593049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 34378128 - 34377902
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||| |||||||||| ||| |||||||||||||||||| ||| |||| ||||||||||||||||| ||||| |||||||||||||||||||||||    
T  34378128 agtgatcggcccaccagactttagtaccaaattagcagggcactccttgcccccggtacaccagagaaaacccaaatcaagtcaaacaaagattgcagct 34378029  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcgaagtttaaacaaca 200  Q
    ||||| ||||||||||||||||||||||||||| ||||| | ||||||||||||||| |||| |||||| ||||| | ||||| ||||||||||||||||    
T  34378028 agacctcgactcccgatctcgaagccaaatgaaccggcctaccgaaaaccagcacacgatatataagacgaaagatatggcatacgaagtttaaacaaca 34377929  T
Q  201 aacaaatcaaaaggaaaaggctcaaac 227  Q
    ||| |||||||||||||||||||||||    
T  34377928 aacgaatcaaaaggaaaaggctcaaac 34377902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 4 - 148
Target Start/End: Complemental strand, 29087508 - 29087364
Alignment:
Q  4 gatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagctaga 103  Q
    |||| |||||||||||| |||||||||| |||||| ||||||||||||| ||||||| |||||||  |||||| ||||||||||||||||||||||||||    
T  29087508 gatcagtccaccagactttagaaccaaaatagcagagcacccctcgcccccggtacaacagagaattaccaaaacaagtcaaacaaagattgcagctaga 29087409  T
Q  104 ccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaa 148  Q
    | |||||||||||||||||||||||||||| ||||||| ||||||    
T  29087408 ctccgactcccgatctcgaagccaaatgaaccggcccaccgaaaa 29087364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 7392082 - 7392252
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    |||||||||||||||||||| ||| ||||||| || |||||||||||| ||||||||||| |||||||| |||||| |||| ||||| ||||||||||||    
T  7392082 agtgatcggtccaccagactttaggaccaaatcagaagggcacccctcaccctcggtacatcagagaaacaccaaatcaagccaaac-aagattgcagct 7392180  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaa 172  Q
    |||| || ||||||||||||||||| |||  || ||| |||||  | |||| ||||||| | ||||||||||    
T  7392181 agacaccaactcccgatctcgaagcaaaagtaaccggtccatcagataccaacacacaaaaagtaagacaaa 7392252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 13954285 - 13954441
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||| |||||||||| ||| ||||||| || ||| |||||||| || ||||||||||||||||| || ||| ||||||||| || ||||||||||    
T  13954285 agtgatcggcccaccagactttaggaccaaatcagaagg-cacccctcaccttcggtacaccagagaaacacaaaatcaagtcaaataa-gattgcagct 13954382  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaa 159  Q
    |||| |||||||  ||||||||||| |||  || ||||||| |||||||||||| ||||    
T  13954383 agacaccgactcttgatctcgaagcaaaagtaaccggcccaccgaaaaccagcatacaa 13954441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 153
Target Start/End: Complemental strand, 8297477 - 8297347
Alignment:
Q  22 tagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagctagaccccgactcccgatctcg 121  Q
    ||||||||||| || |||||||||||| |||||||||||| ||||||| |||||| ||||  ||||||| ||||||||||||| || |||| ||||||||    
T  8297477 tagaaccaaatcagaagggcacccctcaccctcggtacactagagaaacaccaaatcaagcaaaacaaa-attgcagctagacaccaactctcgatctcg 8297379  T
Q  122 aagccaaatgaatcggcccatcgaaaaccagc 153  Q
    |||| |||  ||||||||||  ||||||||||    
T  8297378 aagcaaaagtaatcggcccactgaaaaccagc 8297347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 14302481 - 14302604
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||| |||||||||||| ||| ||||||  || |||||| ||||| |||||| ||||||||||||| |||| | || | |||||  || ||||||||    
T  14302481 agtgatcagtccaccagactttaggaccaaaacagaagggcatccctcaccctcgatacaccagagaaacaccagatcacgccaaac-tagcttgcagct 14302579  T
Q  101 agaccccgactcccgatctcgaagc 125  Q
    |||| | ||||||||||||||||||    
T  14302580 agacacggactcccgatctcgaagc 14302604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 33258933 - 33259050
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||| |||||||||| ||| ||||||  || ||| |||||||| || ||||||||||||||||| |||||| |  | ||||| ||||||| ||||    
T  33258933 agtgatcggcccaccagactttagcaccaaaacagaaggacacccctcaccttcggtacaccagagaaacaccaaatcgcgccaaac-aagattgtagct 33259031  T
Q  101 agaccccgactcccgatct 119  Q
    |||  ||||||||||||||    
T  33259032 agataccgactcccgatct 33259050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 7195290 - 7195461
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    |||||||||  ||||||||| ||   |||||| || |||||||||||| |||| ||||||||||||||| || ||| || | |||||||  |||||||||    
T  7195290 agtgatcggctcaccagactttatggccaaatcagaagggcacccctcaccct-ggtacaccagagaaacactaaatcacgccaaacaat-attgcagct 7195387  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggccca-tcgaaaaccagcacacaatatgtaagacaaaa 173  Q
    || | |||||||||||||||||||| |||  ||  |||||| | |||||||| ||||||| | ||| |||||||    
T  7195388 agccaccgactcccgatctcgaagcaaaagtaactggcccactggaaaaccaacacacaaaaagtatgacaaaa 7195461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 177
Target Start/End: Original strand, 26046068 - 26046190
Alignment:
Q  54 cggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagctagaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagc 153  Q
    |||||||||||||||| |||||| || | |||| || |||||||||||| | |||||||||| ||||||||| |||| |||| ||||| |  |||| |||    
T  26046068 cggtacaccagagaaacaccaaatcacgccaaataa-gattgcagctagccaccgactcccggtctcgaagcaaaattaatctgcccaccagaaactagc 26046166  T
Q  154 acacaatatgtaagacaaaagaca 177  Q
    |||||| | ||| |||||| ||||    
T  26046167 acacaaaaagtatgacaaacgaca 26046190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 25992027 - 25991936
Alignment:
Q  11 ccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagctaga 103  Q
    |||||||||| ||| |||||| ||| ||||||| ||||  | ||||||||||||| ||| | |||| |  ||||||| |||||||||||||||    
T  25992027 ccaccagactttagcaccaaaatagaagggcactcctcatcttcggtacaccagaaaaacatcaaatcgtgtcaaac-aagattgcagctaga 25991936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 35822 - 36047
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaacc-aagtcaaacaaagattgcagc 99  Q
    ||||||||| |||| |||||||| ||||||||||||  |||||||||||||| |||||||||||||||||||||||   ||||||||||||||||||| |    
T  35822 agtgatcggcccactagactatataaccaaattagctaggcacccctcgcccccggtacaccagagaaaaaccaaaattaagtcaaacaaagattgcaac 35921  T
Q  100 tagaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcgaagtttaaacaac 199  Q
    |||||| ||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  35922 tagacctcgactcccgatctcgaagccaaatgaaccggcccaccgaaagccagcacacaatatgtaagacgaaagacatggcatgcgaagtttaaacaac 36021  T
Q  200 aaacaaatcaaaaggaaaaggctcaa 225  Q
    ||||||||||||||||||||||||||    
T  36022 aaacaaatcaaaaggaaaaggctcaa 36047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 16510352 - 16510568
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||| |||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  16510352 agtgatcggcccactagactttagaaccaaattagcagggcaccccttgccctcggtacaccagagaaaaaccatatcaagtcaaacaaagattgcagct 16510451  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcgaagtttaaacaaca 200  Q
    ||||||||||||||||||||||||| |||  || ||||||| |||||||       || |||||||||||||||||| ||||||||||| | ||||||||    
T  16510452 agaccccgactcccgatctcgaagcaaaagtaaccggcccaacgaaaac-------cattatgtaagacaaaagacatggcatgcgaag-taaaacaaca 16510543  T
Q  201 aacaaatcaaaaggaaaaggctcaa 225  Q
    |||||||||||||||||||||||||    
T  16510544 aacaaatcaaaaggaaaaggctcaa 16510568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 3117523 - 3117304
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaa-caaagattgcagc 99  Q
    ||||||||| |||||| ||||||  | ||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||| ||||||||||| |    
T  3117523 agtgatcggcccaccatactatatcaacaaattagcagggcacccctcgcccccggaacaccagagaaaaaccaaatcaagtcaaaacaaagattgcaac 3117424  T
Q  100 tagaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggcatgcgaagtttaaacaac 199  Q
    ||||||||||||||| |||||||||||||||||| |||||||  |||||||| ||||||||||||||||  ||||||| ||||||| ||| || ||||||    
T  3117423 tagaccccgactcccaatctcgaagccaaatgaaccggcccactgaaaaccaacacacaatatgtaagatgaaagacatggcatgcaaagattgaacaac 3117324  T
Q  200 aaacaaatcaaaaggaaaag 219  Q
    |||||||| ||||| |||||    
T  3117323 aaacaaataaaaagaaaaag 3117304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 20701854 - 20702024
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    |||||||||  |||||| ||| |  ||||||| || |||||||||||| ||| ||||||||||||||||||||||| || | ||||||||  ||||||||    
T  20701854 agtgatcggcacaccagtctaaatgaccaaatcagaagggcacccctcacccccggtacaccagagaaaaaccaaatcacgccaaacaaa-tttgcagct 20701952  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaa 172  Q
    |||| |||| |||||||||| |||| |||  || |||||||||| |||||| ||||||| | ||| ||||||    
T  20701953 agacaccgaatcccgatctcaaagcaaaagtaaccggcccatcggaaaccatcacacaaaaagtaggacaaa 20702024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 161
Target Start/End: Original strand, 15132585 - 15132732
Alignment:
Q  12 caccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagctagaccccgact 111  Q
    ||||||||| |||||| |||| | ||||||||||||||||| | ||||| ||||||| | ||| | |||||||||||  |||||||||||| | ||||||    
T  15132585 caccagactttagaacaaaatcaacagggcacccctcgcccccagtacatcagagaaca-ccatatcaagtcaaacag-gattgcagctagtcaccgact 15132682  T
Q  112 cccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaata 161  Q
    |||||||||||||| |||  || ||||||| ||||||||| |||||||||    
T  15132683 cccgatctcgaagcaaaagtaaccggcccaccgaaaaccatcacacaata 15132732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 3880634 - 3880791
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||| |||||| ||| ||| ||||||| || |||||||| ||| ||||||||| |||||||||| |||||| || | ||||||| ||| ||||||    
T  3880634 agtgatcggcccaccaaactttaggaccaaatcagaagggcacctctcaccctcggtaaaccagagaaacaccaaatcatgccaaacaa-gatagcagct 3880732  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaa 159  Q
    |||| ||||||||||||||| |||| |||  ||  |||||| || ||||||||| ||||    
T  3880733 agacaccgactcccgatctcaaagcaaaagtaactggcccaccggaaaccagcaaacaa 3880791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 168
Target Start/End: Original strand, 32935393 - 32935556
Alignment:
Q  4 gatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagctaga 103  Q
    |||||| ||||||||||  || ||||||| || |||| ||||||| ||| || | || || ||||| |||| | |||| |||| || |||||||||||||    
T  32935393 gatcggcccaccagacttcaggaccaaatcagaagggaacccctcacccccgatccatcatagaaacaccataacaagccaaagaa-gattgcagctaga 32935491  T
Q  104 ccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaaga 168  Q
    | || ||| | |||||| |||| |||  || || |||| || || ||||||||||||||||||||    
T  32935492 caccaacttctgatctcaaagcaaaagtaaccgacccaccggaatccagcacacaatatgtaaga 32935556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 182
Target Start/End: Complemental strand, 13423519 - 13423444
Alignment:
Q  106 ccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagacaaggca 182  Q
    ||||||| |||||||||| | |||   ||||| ||| ||||||||||||||||| | |||||||||| |||||||||    
T  13423519 ccgactctcgatctcgaatcaaaagtgatcggtccaccgaaaaccagcacacaa-aagtaagacaaacgacaaggca 13423444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 36737 - 36580
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||| | || ||||||| ||| ||||||| || |||||||||||| | |||||||||||||||||| |||||| || | |||||||| |||||||||    
T  36737 agtgatcagcccgccagactttaggaccaaatcagaagggcacccctcactctcggtacaccagagaaacaccaaatcacgccaaacaaa-attgcagct 36639  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaa 159  Q
    |||| |||||||| ||||||||| | |||| |||||||||| || |||||| |||||||    
T  36638 agacaccgactcctgatctcgaatcaaaattaatcggcccaccggaaaccaacacacaa 36580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 19413 - 19237
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||| |||||||||| ||| ||||||| || |||||||||||| || | |||| |||||||||| | ||||  ||| ||||  |||| |||||||    
T  19413 agtgatcggcccaccagactttaggaccaaatcagaagggcacccctcacctttggtataccagagaaacatcaaattaagccaaaacaagaatgcagct 19314  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagaca 177  Q
    |||| |||||||||||||||||||| |||| || || |||||||  |||||||| ||||   |||||||||| ||||    
T  19313 agacaccgactcccgatctcgaagcaaaattaaccgacccatcgggaaccagcatacaaacagtaagacaaacgaca 19237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 42189 - 42365
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||| |||||||||| ||| || |||| || |||||||||||| || | |||| |||||||||| | ||||  ||| ||||  |||| |||||||    
T  42189 agtgatcggcccaccagactttaggactaaatcagaagggcacccctcacctttggtataccagagaaacatcaaattaagccaaaacaagaatgcagct 42288  T
Q  101 agaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacacaatatgtaagacaaaagaca 177  Q
    ||||  ||||||||||||||||||| |||| || || |||||||  |||||||| ||||   |||||||||| ||||    
T  42289 agacatcgactcccgatctcgaagcaaaattaaccgacccatcgggaaccagcatacaaacagtaagacaaacgaca 42365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 58157 - 58034
Alignment:
Q  1 agtgatcggtccaccagactatagaaccaaattagcagggcacccctcgccctcggtacaccagagaaaaaccaaaccaagtcaaacaaagattgcagct 100  Q
    ||||||||| |||||| ||| ||| |||||||  | ||||||||   | |||| ||||||||||||||| |||||| || | ||||||| ||||||||||    
T  58157 agtgatcggcccaccaaactttaggaccaaatctgaagggcaccatacaccctaggtacaccagagaaacaccaaatcacgccaaacaa-gattgcagct 58059  T
Q  101 agaccccgactcccgatctcgaagc 125  Q
    ||||  |||||||||||||||||||    
T  58058 agacaacgactcccgatctcgaagc 58034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 177
Target Start/End: Original strand, 1125 - 1242
Alignment:
Q  59 caccagagaaaaaccaaaccaagtcaaacaaagattgcagctagaccccgactcccgatctcgaagccaaatgaatcggcccatcgaaaaccagcacaca 158  Q
    ||||||||||| ||||||   | |||||||| |||||||||||||| || |||||| |||||||||| |||  ||||||||||    || ||||||||||    
T  1125 caccagagaaacaccaaaatcaatcaaacaa-gattgcagctagacaccaactcccaatctcgaagcaaaagtaatcggcccactagaatccagcacaca 1223  T
Q  159 atatgtaagacaaaagaca 177  Q
    |||||||||||||| ||||    
T  1224 atatgtaagacaaacgaca 1242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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