View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_187 (Length: 240)
Name: NF1715_low_187
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_187 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 41561967 - 41561738
Alignment:
| Q |
1 |
ttgttaagtatgagctctaaaattagtgtatgatctctcaatttttctccctaattttcgtcggtaattcagannnnnnnnnn--------gtgtgtgtt |
92 |
Q |
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| T |
41561967 |
ttgttaagtatgagctctaaaattagtgtatgatctctcaatttttctccctaattttcgtcggcaattcagaatttttttttttttttttgtgtgtgtt |
41561868 |
T |
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| Q |
93 |
gaacttaatcacctgtaacctagtggtttgtgagggaaactgaattggggagatgttaagagtttgagataatctctccaataattaaaactctctgctg |
192 |
Q |
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| T |
41561867 |
gaacttaatcacctgtaacctggtggtttgtgagggaaactgaattggggagatgttaagagtttgagataatctctccaataattaaaactctctgctg |
41561768 |
T |
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| Q |
193 |
gaggatggaagctagtgccatgcctgatgg |
222 |
Q |
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| T |
41561767 |
gaggatggaagctagtgccatgcctgatgg |
41561738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 90 - 222
Target Start/End: Complemental strand, 41556997 - 41556866
Alignment:
| Q |
90 |
gttgaacttaatcacctgtaacctagtggtttgtgagggaaactgaattggggagatgttaagagtttgagataatctctccaataattaaaactctctg |
189 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||| ||| | |||||||| |
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| T |
41556997 |
gttgaacttaat-acctgtaacctggtggtttgtgagggaaattgaattggggagatgttaagactttgaggtaatctctccaaaaatgtacactctctg |
41556899 |
T |
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| Q |
190 |
ctggaggatggaagctagtgccatgcctgatgg |
222 |
Q |
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| T |
41556898 |
ctggaagatggaagctagtgccatgtctgatgg |
41556866 |
T |
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