View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_188 (Length: 240)
Name: NF1715_low_188
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_188 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 9500113 - 9499907
Alignment:
| Q |
20 |
gtaaaagaatgcaaaaacagggggcggtagagtttaaattacacaacatcacacnnnnnnnnga------aagttatgcaaaaacagaacaaagctcact |
113 |
Q |
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| T |
9500113 |
gtaaaagaatgcaaaa-cagggggcggtagagtttaaattacacaacatcacacacaaaaaaaagaacataagttatgcaaaa-cagaacaaagctcact |
9500016 |
T |
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| Q |
114 |
gacatgtgaaaaaagaacagtgggagggatggccagcaacataccagaacggtcagcaaacagtaataaacaacaacctagccttatcccactaagtgga |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
9500015 |
gacatgtgaaaaaagaacagtgggagggatggccagcaacataccagaacggtcagcagacagtaataaacaacaacctagccttatcccactgagtgga |
9499916 |
T |
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| Q |
214 |
tcaaacgac |
222 |
Q |
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||||||||| |
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| T |
9499915 |
tcaaacgac |
9499907 |
T |
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