View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_189 (Length: 240)
Name: NF1715_low_189
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_189 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 27448262 - 27448492
Alignment:
| Q |
1 |
ttcatcatccaataatcctatgttcatgtactacttttataaacttatgttgtgctattaaacatattacagaataaatcaagcattaatgatacgtttc |
100 |
Q |
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| T |
27448262 |
ttcatcatccaataatcctatgttcatgtactacttttataaacttatgttgtgctattaaacatattacagaataaatcaagcattaatgatacgtttc |
27448361 |
T |
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| Q |
101 |
taaggtgatatattgattctatgttatgagcaacaacaaaatattataataaaaaaggaagatatattattgttttttaccttatttcaagcactttcag |
200 |
Q |
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| T |
27448362 |
taaggtgatatattgattctatgttatgagcaacaacaaaatattataataaaaaaggaagatatattattgttttttaccttatttcaagcactttcag |
27448461 |
T |
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| Q |
201 |
cgtaatctcaagttgaatgaacaattcttct |
231 |
Q |
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| T |
27448462 |
cgtaagctcaagttgaatgaacaattcttct |
27448492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 110 - 231
Target Start/End: Original strand, 27422605 - 27422734
Alignment:
| Q |
110 |
atattgattctatgttatgagcaacaacaaaatatt-------ataataaaaaaggaagatatattattgtttt-ttaccttatttcaagcactttcagc |
201 |
Q |
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| T |
27422605 |
atattgattctatgttatgagcagcaacaacatatggaaggaaagaaaaaaaagggaagctatatgattgtttttttaccttatttgcagcactttcagc |
27422704 |
T |
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| Q |
202 |
gtaatctcaagttgaatgaacaattcttct |
231 |
Q |
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| T |
27422705 |
gtaagctcaagttgaatgaacaattcttct |
27422734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 153 - 231
Target Start/End: Original strand, 18092020 - 18092098
Alignment:
| Q |
153 |
aaaaggaagatatattattgttttttaccttatttcaagcactttcagcgtaatctcaagttgaatgaacaattcttct |
231 |
Q |
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|||||||| ||||| ||||||||||||||||||| || |||||||||||| |||| ||||||||||||||| |||| |
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| T |
18092020 |
aaaaggaaactatatgattgttttttaccttatttgcagtactttcagcgtatgctcacgttgaatgaacaattattct |
18092098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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