View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1715_low_19 (Length: 529)

Name: NF1715_low_19
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1715_low_19
NF1715_low_19
[»] chr2 (3 HSPs)
chr2 (178-419)||(17830057-17830297)
chr2 (92-168)||(11911259-11911335)
chr2 (89-168)||(17785721-17785800)
[»] scaffold0351 (5 HSPs)
scaffold0351 (238-354)||(5437-5553)
scaffold0351 (238-354)||(13780-13896)
scaffold0351 (292-354)||(1-63)
scaffold0351 (184-229)||(5374-5419)
scaffold0351 (183-220)||(13716-13753)
[»] scaffold0002 (2 HSPs)
scaffold0002 (238-354)||(114798-114914)
scaffold0002 (177-229)||(114932-114984)
[»] chr5 (3 HSPs)
chr5 (178-395)||(7822335-7822562)
chr5 (177-229)||(28662926-28662979)
chr5 (238-278)||(28663000-28663040)
[»] chr3 (3 HSPs)
chr3 (239-350)||(44125954-44126065)
chr3 (390-436)||(44126050-44126096)
chr3 (178-229)||(27545768-27545819)
[»] chr1 (4 HSPs)
chr1 (238-351)||(36687824-36687937)
chr1 (239-321)||(26024163-26024245)
chr1 (177-229)||(36687957-36688009)
chr1 (189-227)||(26024265-26024303)
[»] chr4 (1 HSPs)
chr4 (251-366)||(56339660-56339775)
[»] scaffold0248 (1 HSPs)
scaffold0248 (178-298)||(16837-16959)
[»] chr6 (2 HSPs)
chr6 (177-229)||(11303171-11303223)
chr6 (238-287)||(11303104-11303153)


Alignment Details
Target: chr2 (Bit Score: 157; Significance: 3e-83; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 178 - 419
Target Start/End: Original strand, 17830057 - 17830297
Alignment:
Q  178 tcaacaaaaattatatgcaaaaatataaatatagatcaatcaagtttaccatnnnnnnnnttggttaagtaaatacaatcaagttaaacttgaaaaataa 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||        || ||||| | |||||||||||||||||||||||||||||    
T  17830057 tcaacaaaaattatatgcaaaaatataaatatagatcaatcaagttaaccataaaaaaa-ttagttaaatgaatacaatcaagttaaacttgaaaaataa 17830155  T
Q  278 tttcacatatgattcaagactaaataaggaattgtgataaaatatataattgtgatagagatgcacacaataatcaaaataaaataaacttggccaatgg 377  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  17830156 tttcacatatgattcaagagtaaataatgaattgtgataaaatatataattgtgatagagatgcacacaataatcaaaacaaaataaacttggccaatgg 17830255  T
Q  378 ttaaattttgtcgagatgcacacaataaatattattcaatat 419  Q
    |||| ||||||  ||||| |||  |||| |||||||||||||    
T  17830256 ttaatttttgtatagatgtacaagataagtattattcaatat 17830297  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 168
Target Start/End: Original strand, 11911259 - 11911335
Alignment:
Q  92 ggaatccttgaattgggatcaaatgatgccatccttgcacaaaacaagatcttgactcaaaaactcgaagaaatgaa 168  Q
    ||||||||||| || ||||||  |||||| |  |||||||||||||| |||||||||||| |||| ||||| |||||    
T  11911259 ggaatccttgagttaggatcagctgatgcaaatcttgcacaaaacaaaatcttgactcaacaacttgaagagatgaa 11911335  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 168
Target Start/End: Original strand, 17785721 - 17785800
Alignment:
Q  89 tctggaatccttgaattgggatcaaatgatgccatccttgcacaaaacaagatcttgactcaaaaactcgaagaaatgaa 168  Q
    |||||||||||||| || ||||||  |||||| |  ||||||||||||||  ||||||||||| |||| ||||| |||||    
T  17785721 tctggaatccttgagttaggatcagctgatgcaaatcttgcacaaaacaaattcttgactcaacaacttgaagagatgaa 17785800  T

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Target: scaffold0351 (Bit Score: 101; Significance: 8e-50; HSPs: 5)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 238 - 354
Target Start/End: Original strand, 5437 - 5553
Alignment:
Q  238 ttggttaagtaaatacaatcaagttaaacttgaaaaataatttcacatatgattcaagactaaataaggaattgtgataaaatatataattgtgatagag 337  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5437 ttggttaaacaaatacaatcaagttaaacttgaaaaataatttcacatatgattcaagactaaataagaaattgtgataaaatatataattgtgatagag 5536  T
Q  338 atgcacacaataatcaa 354  Q
     ||||||||||||||||    
T  5537 gtgcacacaataatcaa 5553  T

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Target: scaffold0351; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 238 - 354
Target Start/End: Original strand, 13780 - 13896
Alignment:
Q  238 ttggttaagtaaatacaatcaagttaaacttgaaaaataatttcacatatgattcaagactaaataaggaattgtgataaaatatataattgtgatagag 337  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  13780 ttggttaaacaaatacaatcaagttaaacttgaaaaataatttcacatatgatgcaagactaaataagaaattgtgataaaatatataattgtgatagag 13879  T
Q  338 atgcacacaataatcaa 354  Q
     ||||||||||||||||    
T  13880 gtgcacacaataatcaa 13896  T

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Target: scaffold0351; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 292 - 354
Target Start/End: Original strand, 1 - 63
Alignment:
Q  292 caagactaaataaggaattgtgataaaatatataattgtgatagagatgcacacaataatcaa 354  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1 caagactaaataagaaattgtgataaaatatataattgtgatagaggtgcacacaataatcaa 63  T

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Target: scaffold0351; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 5374 - 5419
Alignment:
Q  184 aaaattatatgcaaaaatataaatatagatcaatcaagtttaccat 229  Q
    |||||||||||||||||||||| |||||||||||||| || |||||    
T  5374 aaaattatatgcaaaaatataagtatagatcaatcaaattaaccat 5419  T

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Target: scaffold0351; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 13716 - 13753
Alignment:
Q  183 aaaaattatatgcaaaaatataaatatagatcaatcaa 220  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  13716 aaaaattatatgcaaaaatataagtatagatcaatcaa 13753  T

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Target: scaffold0002 (Bit Score: 101; Significance: 8e-50; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 238 - 354
Target Start/End: Complemental strand, 114914 - 114798
Alignment:
Q  238 ttggttaagtaaatacaatcaagttaaacttgaaaaataatttcacatatgattcaagactaaataaggaattgtgataaaatatataattgtgatagag 337  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  114914 ttggttaaacaaatacaatcaagttaaacttgaaaaataatttcacatatgattcaagactaaataagaaattgtgataaaatatataattgtgatagag 114815  T
Q  338 atgcacacaataatcaa 354  Q
     ||||||||||||||||    
T  114814 gtgcacacaataatcaa 114798  T

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Target: scaffold0002; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 114984 - 114932
Alignment:
Q  177 ctcaacaaaaattatatgcaaaaatataaatatagatcaatcaagtttaccat 229  Q
    ||||| ||||||||||||||||||||||| |||||||||||||| || |||||    
T  114984 ctcaaaaaaaattatatgcaaaaatataagtatagatcaatcaaattaaccat 114932  T

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Target: chr5 (Bit Score: 101; Significance: 8e-50; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 178 - 395
Target Start/End: Original strand, 7822335 - 7822562
Alignment:
Q  178 tcaacaaaaattatatgcaaaaatataaatatagatcaatcaagtttaccatnnnnnnnn----------ttggttaagtaaatacaatcaagttaaact 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||                   ||||||||  ||||||||||||||||||||    
T  7822335 tcaacaaaaattatatgcaaaaatataaatatagatcaatcaagttaaccaattttataaagaaaaacaattggttaaacaaatacaatcaagttaaact 7822434  T
Q  268 tgaaaaataatttcacatatgattcaagactaaataaggaattgtgataaaatatataattgtgatagagatgcacacaataatcaaaataaaataaact 367  Q
    |||||||||||||||||||| |||||| |  ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||  || |||    
T  7822435 tgaaaaataatttcacatataattcaaaatcaaacaaggaattgtgataaaatatataattgtgatagagatgcacaaaataatcaaaacaacgtacact 7822534  T
Q  368 tggccaatggttaaattttgtcgagatg 395  Q
    |||||||  |||||||||||| ||||||    
T  7822535 tggccaaaagttaaattttgtagagatg 7822562  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 28662926 - 28662979
Alignment:
Q  177 ctcaacaaaaattatatgc-aaaaatataaatatagatcaatcaagtttaccat 229  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||| |||||    
T  28662926 ctcaacaaaaattacatgccaaaaatataaatatagatcaatcaagttaaccat 28662979  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 278
Target Start/End: Original strand, 28663000 - 28663040
Alignment:
Q  238 ttggttaagtaaatacaatcaagttaaacttgaaaaataat 278  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  28663000 ttggttaaggaaatacaatcaagttaaacttgaaaaataat 28663040  T

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Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 239 - 350
Target Start/End: Original strand, 44125954 - 44126065
Alignment:
Q  239 tggttaagtaaatacaatcaagttaaacttgaaaaataatttcacatatgattcaagactaaataaggaattgtgataaaatatataattgtgatagaga 338  Q
    |||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44125954 tggttaaacaaatacaatcaagttatacttgaaaaataatttcacatatgattcaagactaaataaggaattgtgataaaatatataattgtgatagaga 44126053  T
Q  339 tgcacacaataa 350  Q
    ||||||||||||    
T  44126054 tgcacacaataa 44126065  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 390 - 436
Target Start/End: Original strand, 44126050 - 44126096
Alignment:
Q  390 gagatgcacacaataaatattattcaatatatcgagtttggcaaaat 436  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||    
T  44126050 gagatgcacacaataagtattaatcaatatatcgagtttggcaaaat 44126096  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 27545819 - 27545768
Alignment:
Q  178 tcaacaaaaattatatgcaaaaatataaatatagatcaatcaagtttaccat 229  Q
    |||||||||||||||   |||||||||||||||||||||||||||| |||||    
T  27545819 tcaacaaaaattataaataaaaatataaatatagatcaatcaagttaaccat 27545768  T

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Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 238 - 351
Target Start/End: Complemental strand, 36687937 - 36687824
Alignment:
Q  238 ttggttaagtaaatacaatcaagttaaacttgaaaaataatttcacatatgattcaagactaaataaggaattgtgataaaatatataattgtgatagag 337  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||  |||||||||| ||||    
T  36687937 ttggttaaacaaatacaatcaagttaaacttgaaaaataatttcacatatgattcaagactaaataaaaaattgtgataaaatgcataattgtgacagag 36687838  T
Q  338 atgcacacaataat 351  Q
    ||  ||||||||||    
T  36687837 ataaacacaataat 36687824  T

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Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 239 - 321
Target Start/End: Complemental strand, 26024245 - 26024163
Alignment:
Q  239 tggttaagtaaatacaatcaagttaaacttgaaaaataatttcacatatgattcaagactaaataaggaattgtgataaaata 321  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  26024245 tggttaaacaaatacaatcaagttaaacttgaaaaataatttcacatatgattcaagactaaataaagaattctgataaaata 26024163  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 36688009 - 36687957
Alignment:
Q  177 ctcaacaaaaattatatgcaaaaatataaatatagatcaatcaagtttaccat 229  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||| |||||    
T  36688009 ctcaacaaaaattatatgcaagaatataaatacagatcaatcaagttaaccat 36687957  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 227
Target Start/End: Complemental strand, 26024303 - 26024265
Alignment:
Q  189 tatatgcaaaaatataaatatagatcaatcaagtttacc 227  Q
    ||||||||||||||||||||||||||||||||||| |||    
T  26024303 tatatgcaaaaatataaatatagatcaatcaagttaacc 26024265  T

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Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 251 - 366
Target Start/End: Original strand, 56339660 - 56339775
Alignment:
Q  251 tacaatcaagttaaacttgaaaaataatttcacatatgattcaagactaaataaggaattgtgataaaatatataattgtgatagagatgcacacaataa 350  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||  | |  ||||| |||||||||||||||||||||| ||||||||||    
T  56339660 tacaatcaagttaaacttggaaaataatttcacatataattcaagacaaaataaaaattaatgatagaatatataattgtgatagagatacacacaataa 56339759  T
Q  351 tcaaaataaaataaac 366  Q
    |||||| |||||||||    
T  56339760 tcaaaagaaaataaac 56339775  T

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Target: scaffold0248 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 178 - 298
Target Start/End: Complemental strand, 16959 - 16837
Alignment:
Q  178 tcaacaaaaattatatgcaaaaatataaatatagatcaatcaagtttaccatnnnnnnnn---ttggttaagtaaatacaatcaagttaaacttgaaaaa 274  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||| |||||           ||||||||  ||||||||||||| |||||||||||||    
T  16959 tcaacaaaaattatatacaaaa-tataaatatagatcaatcaagttaaccataaaaaaaaaaattggttaaacaaatacaatcaagataaacttgaaaaa 16861  T
Q  275 taatttcacatatgattcaagact 298  Q
    ||||||||||||| ||||||||||    
T  16860 taatttcacatatcattcaagact 16837  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 11303223 - 11303171
Alignment:
Q  177 ctcaacaaaaattatatgcaaaaatataaatatagatcaatcaagtttaccat 229  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||| |||||    
T  11303223 ctcaacaaaaattatatgcaaaaatacaaatgtagatcaatcaagttaaccat 11303171  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 238 - 287
Target Start/End: Complemental strand, 11303153 - 11303104
Alignment:
Q  238 ttggttaagtaaatacaatcaagttaaacttgaaaaataatttcacatat 287  Q
    ||||||||  ||||||||||||||||||||||||||||| ||||||||||    
T  11303153 ttggttaaacaaatacaatcaagttaaacttgaaaaatactttcacatat 11303104  T

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