View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1715_low_191 (Length: 239)

Name: NF1715_low_191
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1715_low_191
NF1715_low_191
[»] chr4 (20 HSPs)
chr4 (16-82)||(47744404-47744470)
chr4 (17-85)||(19748750-19748817)
chr4 (17-85)||(19790989-19791056)
chr4 (29-85)||(12595519-12595574)
chr4 (22-85)||(1872728-1872790)
chr4 (18-80)||(45143567-45143627)
chr4 (18-80)||(45152336-45152396)
chr4 (19-82)||(1627447-1627512)
chr4 (18-82)||(50831647-50831710)
chr4 (11-82)||(6520725-6520795)
chr4 (18-81)||(17683458-17683519)
chr4 (18-81)||(22819766-22819827)
chr4 (11-62)||(24990224-24990275)
chr4 (19-85)||(19174663-19174728)
chr4 (20-85)||(23667997-23668061)
chr4 (16-81)||(37060430-37060494)
chr4 (19-82)||(46038780-46038840)
chr4 (18-82)||(336699-336762)
chr4 (33-81)||(40609745-40609793)
chr4 (18-82)||(42491190-42491253)
[»] chr2 (11 HSPs)
chr2 (19-85)||(39147883-39147948)
chr2 (29-85)||(8427680-8427735)
chr2 (19-82)||(14255420-14255482)
chr2 (19-86)||(20532350-20532416)
chr2 (19-82)||(27490622-27490684)
chr2 (18-81)||(36517313-36517374)
chr2 (18-81)||(37105755-37105816)
chr2 (39-81)||(38821501-38821543)
chr2 (33-78)||(30546255-30546300)
chr2 (33-81)||(13765531-13765578)
chr2 (17-85)||(31296653-31296720)
[»] chr3 (12 HSPs)
chr3 (19-85)||(46965898-46965963)
chr3 (18-85)||(819102-819168)
chr3 (18-81)||(46852025-46852086)
chr3 (20-82)||(46965992-46966053)
chr3 (18-81)||(9158765-9158827)
chr3 (18-81)||(39697115-39697176)
chr3 (18-81)||(51465807-51465868)
chr3 (39-81)||(10811272-10811314)
chr3 (18-78)||(26645143-26645201)
chr3 (29-85)||(33256436-33256491)
chr3 (19-79)||(37561829-37561888)
chr3 (29-85)||(41637187-41637242)
[»] chr7 (8 HSPs)
chr7 (19-80)||(1504254-1504314)
chr7 (18-82)||(41018780-41018843)
chr7 (17-81)||(11352867-11352929)
chr7 (11-82)||(20337420-20337490)
chr7 (18-82)||(1284530-1284593)
chr7 (36-80)||(22638777-22638821)
chr7 (33-81)||(34757363-34757411)
chr7 (18-82)||(43159467-43159530)
[»] chr6 (5 HSPs)
chr6 (19-82)||(3552047-3552109)
chr6 (18-81)||(35213454-35213515)
chr6 (29-81)||(5522532-5522583)
chr6 (18-81)||(13143275-13143336)
chr6 (18-78)||(31883199-31883258)
[»] chr1 (8 HSPs)
chr1 (18-81)||(32914965-32915026)
chr1 (18-81)||(10889939-10890000)
chr1 (18-81)||(13489779-13489840)
chr1 (18-81)||(50328034-50328095)
chr1 (48-86)||(6340872-6340910)
chr1 (17-85)||(32923362-32923429)
chr1 (33-81)||(47215622-47215670)
chr1 (18-82)||(51571238-51571301)
[»] chr5 (7 HSPs)
chr5 (17-82)||(27546181-27546245)
chr5 (33-81)||(32912169-32912216)
chr5 (18-81)||(8675326-8675387)
chr5 (18-81)||(9226417-9226479)
chr5 (18-81)||(19839879-19839940)
chr5 (17-82)||(24405847-24405911)
chr5 (33-81)||(189596-189643)
[»] scaffold0141 (1 HSPs)
scaffold0141 (18-81)||(12049-12110)
[»] chr8 (4 HSPs)
chr8 (18-81)||(42110075-42110137)
chr8 (39-81)||(37657126-37657168)
chr8 (17-82)||(39856153-39856217)
chr8 (18-82)||(13106596-13106659)


Alignment Details
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 47744470 - 47744404
Alignment:
Q  16 catttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacaca 82  Q
    |||||||||||| ||| ||||| |||||||||||||| |||  ||||||||||||||||||||||||    
T  47744470 catttttctttgtaaaattatggttgtcccaaaagttatcaatcaaaatagttgttcaaataacaca 47744404  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 19748750 - 19748817
Alignment:
Q  17 atttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacacatct 85  Q
    ||||||||||| ||||||||||||||  |||||||| ||| |||||||| |||||||||||||||||||    
T  19748750 atttttctttgtaaatttatgattgtttcaaaagttatca-ccaaaataattgttcaaataacacatct 19748817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 19791056 - 19790989
Alignment:
Q  17 atttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacacatct 85  Q
    ||||||||||| ||||||||||||||  |||||||| ||| |||||||| |||||||||||||||||||    
T  19791056 atttttctttgtaaatttatgattgtttcaaaagttatca-ccaaaataattgttcaaataacacatct 19790989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 12595574 - 12595519
Alignment:
Q  29 aaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacacatct 85  Q
    ||||||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||    
T  12595574 aaatttatggttgtcccaaaaattgtcatc-aaaatggttgttcaaataacacatct 12595519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 1872728 - 1872790
Alignment:
Q  22 tctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacacatct 85  Q
    |||||| |||||||||||||||||||||||| |||||| | ||  |||||||||||||||||||    
T  1872728 tctttgtaaatttatgattgtcccaaaagttatcatcc-agatgattgttcaaataacacatct 1872790  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 45143627 - 45143567
Alignment:
Q  18 tttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataaca 80  Q
    |||||||||| ||||| ||| |||||||||||||||||| || ||||||||||||||||||||    
T  45143627 tttttctttgtaaatt-atggttgtcccaaaagttgtcaacc-aaatagttgttcaaataaca 45143567  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 45152396 - 45152336
Alignment:
Q  18 tttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataaca 80  Q
    |||||||||| ||||| ||| |||||||||||||||||| || ||||||||||||||||||||    
T  45152396 tttttctttgtaaatt-atggttgtcccaaaagttgtcaacc-aaatagttgttcaaataaca 45152336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 1627512 - 1627447
Alignment:
Q  19 ttttctttgaaaatttatgattgtcccaa---aagttgtcatccaaaatagttgttcaaataacaca 82  Q
    ||||||||| ||||||||| ||||| |||   ||||||||||||||| |||||||||||||||||||    
T  1627512 ttttctttgtaaatttatggttgtcacaacaaaagttgtcatccaaa-tagttgttcaaataacaca 1627447  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 50831710 - 50831647
Alignment:
Q  18 tttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacaca 82  Q
    |||||||||| ||| ||||| ||||||||||||||||||  | |||| |||||||||||||||||    
T  50831710 tttttctttgtaaaattatggttgtcccaaaagttgtcaatc-aaatggttgttcaaataacaca 50831647  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 6520795 - 6520725
Alignment:
Q  11 acacccatttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacaca 82  Q
    ||||| |||||||||||||| |||||| |||| |||||  ||||||| | |||| |||||||||||||||||    
T  6520795 acacctatttttctttgaaattttatggttgtaccaaatattgtcatac-aaatggttgttcaaataacaca 6520725  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 17683458 - 17683519
Alignment:
Q  18 tttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacac 81  Q
    |||||||||| ||||| ||| |||||||||||||||||| || |||| ||||||||||||||||    
T  17683458 tttttctttgtaaatt-atggttgtcccaaaagttgtcaacc-aaatggttgttcaaataacac 17683519  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 22819766 - 22819827
Alignment:
Q  18 tttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacac 81  Q
    |||||||||| ||||| ||| |||||||||||||||||| || |||| ||||||||||||||||    
T  22819766 tttttctttgtaaatt-atggttgtcccaaaagttgtcaacc-aaatggttgttcaaataacac 22819827  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 24990224 - 24990275
Alignment:
Q  11 acacccatttttctttgaaaatttatgattgtcccaaaagttgtcatccaaa 62  Q
    ||||| ||||||||||| ||||||||| |||||||| |||||||||| ||||    
T  24990224 acacctatttttctttgtaaatttatggttgtcccataagttgtcatacaaa 24990275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 19174728 - 19174663
Alignment:
Q  19 ttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacacatct 85  Q
    ||||||||| ||||||||| ||||| |||||||||||| |  || | ||||||||||||||||||||    
T  19174728 ttttctttgtaaatttatgtttgtctcaaaagttgtca-cacaattggttgttcaaataacacatct 19174663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 23667997 - 23668061
Alignment:
Q  20 tttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacacatct 85  Q
    |||||||| ||||| |||||||||||||||||||||| | |||||  ||||| || ||||||||||    
T  23667997 tttctttgtaaattaatgattgtcccaaaagttgtca-ctaaaatgattgtttaattaacacatct 23668061  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 37060430 - 37060494
Alignment:
Q  16 catttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacac 81  Q
    |||||||||||| ||||||| | ||||| |||||||||||| | ||||| ||| ||||||||||||    
T  37060430 catttttctttgtaaatttagg-ttgtctcaaaagttgtcaacaaaaatggttattcaaataacac 37060494  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 46038780 - 46038840
Alignment:
Q  19 ttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacaca 82  Q
    ||||||||| |||||||||||| ||  ||||||||||||   ||||| ||||||||||||||||    
T  46038780 ttttctttgtaaatttatgattatcataaaagttgtcat---aaataattgttcaaataacaca 46038840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 336762 - 336699
Alignment:
Q  18 tttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacaca 82  Q
    |||||||||| ||||| ||| ||||  |||||||||||||  |||| ||||||||||||||||||    
T  336762 tttttctttgcaaattaatggttgtatcaaaagttgtcat-aaaaaaagttgttcaaataacaca 336699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 40609745 - 40609793
Alignment:
Q  33 ttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacac 81  Q
    ||||| ||||| |||||||||||| ||||| | ||||||||||||||||    
T  40609745 ttatggttgtcacaaaagttgtcaaccaaattggttgttcaaataacac 40609793  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 42491190 - 42491253
Alignment:
Q  18 tttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacaca 82  Q
    ||||||||||  || ||||| ||||||||||||||||||  | |||| |||||||||||||||||    
T  42491190 tttttctttgtgaaattatggttgtcccaaaagttgtcaatc-aaatggttgttcaaataacaca 42491253  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 39147883 - 39147948
Alignment:
Q  19 ttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacacatct 85  Q
    |||| |||| |||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||    
T  39147883 ttttttttgtaaatttatgattgtcccaaaagttgtcat-taaaatggttgttcaaataacacatct 39147948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 8427680 - 8427735
Alignment:
Q  29 aaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacacatct 85  Q
    ||||||||| |||| |||||||||| || |||||||| |||||||||||||||||||    
T  8427680 aaatttatggttgttccaaaagttgcca-ccaaaataattgttcaaataacacatct 8427735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 14255420 - 14255482
Alignment:
Q  19 ttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacaca 82  Q
    ||||||||| ||||||||| |||||||||||||||||  |  |||| |||||||||||||||||    
T  14255420 ttttctttgtaaatttatggttgtcccaaaagttgtc-gcataaatggttgttcaaataacaca 14255482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 20532416 - 20532350
Alignment:
Q  19 ttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacacatctt 86  Q
    ||||||||  ||||||||| || ||||| ||||| |||| |||| |||||||||||||||||||||||    
T  20532416 ttttctttataaatttatggttatcccataagttatcatacaaa-tagttgttcaaataacacatctt 20532350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 27490684 - 27490622
Alignment:
Q  19 ttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacaca 82  Q
    ||||||||| ||| || |||||||| ||||||||||||| |||||| | |||||||||||||||    
T  27490684 ttttctttgtaaaattttgattgtcacaaaagttgtcat-caaaatggatgttcaaataacaca 27490622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 36517313 - 36517374
Alignment:
Q  18 tttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacac 81  Q
    |||||||||| ||||| |||||||||||||||||| |||  |||| ||||||||||||||||||    
T  36517313 tttttctttgtaaatt-atgattgtcccaaaagttatcaatcaaa-tagttgttcaaataacac 36517374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 37105755 - 37105816
Alignment:
Q  18 tttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacac 81  Q
    |||||||||| ||||| ||| ||||| |||||||||||| ||||| ||||||||||||||||||    
T  37105755 tttttctttgtaaatt-atggttgtcacaaaagttgtcaaccaaa-tagttgttcaaataacac 37105816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 38821501 - 38821543
Alignment:
Q  39 ttgtcccaaaagttgtcatccaaaatagttgttcaaataacac 81  Q
    |||||||||||||||||| | ||||| ||||||||||||||||    
T  38821501 ttgtcccaaaagttgtcaacaaaaattgttgttcaaataacac 38821543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 30546300 - 30546255
Alignment:
Q  33 ttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataa 78  Q
    ||||| ||||| |||||||||||| ||||| |||||||||||||||    
T  30546300 ttatggttgtcacaaaagttgtcaaccaaattagttgttcaaataa 30546255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 13765531 - 13765578
Alignment:
Q  33 ttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacac 81  Q
    ||||| |||||||||||||||||| || |||| ||||||||||||||||    
T  13765531 ttatggttgtcccaaaagttgtcaacc-aaatggttgttcaaataacac 13765578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 31296653 - 31296720
Alignment:
Q  17 atttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacacatct 85  Q
    ||||||||||| ||||||||| |||||  ||||||||||| |   ||| ||||||||||||||||||||    
T  31296653 atttttctttgtaaatttatggttgtcataaaagttgtca-cactaatggttgttcaaataacacatct 31296720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 46965963 - 46965898
Alignment:
Q  19 ttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacacatct 85  Q
    ||||||||| |||||||||||||||| ||||||||||| |  |||| ||||||||||||||||||||    
T  46965963 ttttctttgtaaatttatgattgtcctaaaagttgtca-cacaaattgttgttcaaataacacatct 46965898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 819168 - 819102
Alignment:
Q  18 tttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacacatct 85  Q
    |||||||||| ||||| |||||| || ||||||||||||| |||||| |||||| |||||||||||||    
T  819168 tttttctttgtaaattaatgattatctcaaaagttgtcat-caaaatggttgtttaaataacacatct 819102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 46852086 - 46852025
Alignment:
Q  18 tttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacac 81  Q
    |||||||||| ||||| |||||||||||||||||||||| || |||| ||||||||||||||||    
T  46852086 tttttctttgtaaatt-atgattgtcccaaaagttgtcaacc-aaatggttgttcaaataacac 46852025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 46966053 - 46965992
Alignment:
Q  20 tttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacaca 82  Q
    |||||||| |||||||||||||||| ||||||||||| |  |||| |||||||||||||||||    
T  46966053 tttctttgtaaatttatgattgtccgaaaagttgtca-cacaaatggttgttcaaataacaca 46965992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 9158827 - 9158765
Alignment:
Q  18 tttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacac 81  Q
    |||||||||| ||||| ||| ||||| || ||||||||| ||||| ||||||||||||||||||    
T  9158827 tttttctttgtaaatt-atggttgtcacataagttgtcaaccaaattagttgttcaaataacac 9158765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 39697176 - 39697115
Alignment:
Q  18 tttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacac 81  Q
    |||||||||| ||||| ||| ||||||||||||||||||  |||| ||||||||||||||||||    
T  39697176 tttttctttgtaaatt-atggttgtcccaaaagttgtcaatcaaa-tagttgttcaaataacac 39697115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 51465868 - 51465807
Alignment:
Q  18 tttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacac 81  Q
    |||||||||| ||||| ||| |||||||||||||||||| || |||| ||||||||||||||||    
T  51465868 tttttctttgtaaatt-atggttgtcccaaaagttgtcaacc-aaatggttgttcaaataacac 51465807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 10811272 - 10811314
Alignment:
Q  39 ttgtcccaaaagttgtcatccaaaatagttgttcaaataacac 81  Q
    |||||||||||||||||| | ||||| ||||||||||||||||    
T  10811272 ttgtcccaaaagttgtcaacaaaaatggttgttcaaataacac 10811314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 26645143 - 26645201
Alignment:
Q  18 tttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataa 78  Q
    |||||||||| ||||| |||||| ||||| || ||||||||| ||||||||||||||||||    
T  26645143 tttttctttgtaaatt-atgattatcccataaattgtcatcc-aaatagttgttcaaataa 26645201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 33256436 - 33256491
Alignment:
Q  29 aaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacacatct 85  Q
    ||||||||| |||||| |||||||||||  |||| | ||||||||||||||||||||    
T  33256436 aaatttatggttgtcctaaaagttgtcacacaaa-tggttgttcaaataacacatct 33256491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 37561829 - 37561888
Alignment:
Q  19 ttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataac 79  Q
    ||||||||| ||||| ||||||||||||||| |||| || | ||||||||||| |||||||    
T  37561829 ttttctttgtaaattcatgattgtcccaaaaattgttatgc-aaatagttgtttaaataac 37561888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 41637242 - 41637187
Alignment:
Q  29 aaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacacatct 85  Q
    ||||| ||| |||||||||||||| ||||| |||||| ||||||||||| |||||||    
T  41637242 aaattaatggttgtcccaaaagttatcatc-aaaataattgttcaaatagcacatct 41637187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 1504314 - 1504254
Alignment:
Q  19 ttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataaca 80  Q
    ||||||||  |||||||||||||||||||||||| ||| ||||||| |||||||||||||||    
T  1504314 ttttctttataaatttatgattgtcccaaaagttatca-ccaaaatggttgttcaaataaca 1504254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 41018780 - 41018843
Alignment:
Q  18 tttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacaca 82  Q
    |||||||||| |||||||||||||||  ||||||||||| || |||||||| |||||||||||||    
T  41018780 tttttctttgtaaatttatgattgtcataaaagttgtca-cctaaatagttattcaaataacaca 41018843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 11352929 - 11352867
Alignment:
Q  17 atttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacac 81  Q
    ||||||||||| ||||| ||| |||||||||||||||||| || |||| ||||||||||||||||    
T  11352929 atttttctttgtaaatt-atggttgtcccaaaagttgtcaacc-aaatggttgttcaaataacac 11352867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 20337420 - 20337490
Alignment:
Q  11 acacccatttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacaca 82  Q
    |||| |||| ||||||| ||||||||| || || || |||||||||| |||| |||||||||||||||||||    
T  20337420 acactcattgttctttgtaaatttatggttatctcataagttgtcatacaaa-tagttgttcaaataacaca 20337490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 1284530 - 1284593
Alignment:
Q  18 tttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacaca 82  Q
    |||||||||  ||||||||||||||  |||||||| ||||  ||||| |||||||||||||||||    
T  1284530 tttttcttttcaaatttatgattgtatcaaaagttatcat-aaaaatggttgttcaaataacaca 1284593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 22638821 - 22638777
Alignment:
Q  36 tgattgtcccaaaagttgtcatccaaaatagttgttcaaataaca 80  Q
    ||||||||||| |||||||| | |||||| |||||||||||||||    
T  22638821 tgattgtcccacaagttgtcctacaaaatggttgttcaaataaca 22638777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 34757411 - 34757363
Alignment:
Q  33 ttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacac 81  Q
    ||||| ||||| |||||||||||| ||||| | ||||||||||||||||    
T  34757411 ttatggttgtcacaaaagttgtcaaccaaattggttgttcaaataacac 34757363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 43159530 - 43159467
Alignment:
Q  18 tttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacaca 82  Q
    |||||||||| ||||||||| |||||   |||||||||| || |||| |||||||||||||||||    
T  43159530 tttttctttgtaaatttatggttgtcatcaaagttgtca-cctaaatggttgttcaaataacaca 43159467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 3552109 - 3552047
Alignment:
Q  19 ttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacaca 82  Q
    ||||||||| |||||||||||| || |||||||| |||||| |||| |||||||||||||||||    
T  3552109 ttttctttgtaaatttatgattatcacaaaagttatcatcc-aaatggttgttcaaataacaca 3552047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 35213515 - 35213454
Alignment:
Q  18 tttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacac 81  Q
    |||||||||| ||||| |||||||||||||||||||||| || |||| ||||||||||||||||    
T  35213515 tttttctttgtaaatt-atgattgtcccaaaagttgtcaacc-aaatggttgttcaaataacac 35213454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 5522583 - 5522532
Alignment:
Q  29 aaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacac 81  Q
    ||||||||| |||| ||||||||||||| ||||||| ||||||||||||||||    
T  5522583 aaatttatggttgttccaaaagttgtca-ccaaaattgttgttcaaataacac 5522532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 13143336 - 13143275
Alignment:
Q  18 tttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacac 81  Q
    |||||||||| ||||| ||| |||||||||||||||||| || |||| ||||||||||||||||    
T  13143336 tttttctttgtaaatt-atggttgtcccaaaagttgtcaacc-aaatggttgttcaaataacac 13143275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 31883258 - 31883199
Alignment:
Q  18 tttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataa 78  Q
    |||||||||| ||| ||||| ||||||||||| ||||||  | ||||||||||||||||||    
T  31883258 tttttctttgtaaaattatggttgtcccaaaaattgtcaatc-aaatagttgttcaaataa 31883199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 32915026 - 32914965
Alignment:
Q  18 tttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacac 81  Q
    |||||||||| ||||| |||||||| ||||||||||||| || |||||||||||||||||||||    
T  32915026 tttttctttgtaaatt-atgattgttccaaaagttgtcaacc-aaatagttgttcaaataacac 32914965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 10890000 - 10889939
Alignment:
Q  18 tttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacac 81  Q
    |||||||||| ||||| ||| ||||| |||||||||||| ||||| ||||||||||||||||||    
T  10890000 tttttctttgtaaatt-atggttgtcacaaaagttgtcaaccaaa-tagttgttcaaataacac 10889939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 13489779 - 13489840
Alignment:
Q  18 tttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacac 81  Q
    |||||||||| ||||| ||| |||||||| ||||||||| ||||| ||||||||||||||||||    
T  13489779 tttttctttgtaaatt-atggttgtcccagaagttgtcaaccaaa-tagttgttcaaataacac 13489840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 50328095 - 50328034
Alignment:
Q  18 tttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacac 81  Q
    |||||||||| ||||| ||| |||||||||||||||||| || |||| ||||||||||||||||    
T  50328095 tttttctttgtaaatt-atggttgtcccaaaagttgtcaacc-aaatggttgttcaaataacac 50328034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 86
Target Start/End: Original strand, 6340872 - 6340910
Alignment:
Q  48 aagttgtcatccaaaatagttgttcaaataacacatctt 86  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  6340872 aagttgtcatctaaaaaagttgttcaaataacacatctt 6340910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 32923362 - 32923429
Alignment:
Q  17 atttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacacatct 85  Q
    |||||| |||| ||||||||||||||||||||| ||||| ||  ||||  |||||||||| ||||||||    
T  32923362 atttttatttgtaaatttatgattgtcccaaaaattgtc-tcacaaatgattgttcaaattacacatct 32923429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 47215670 - 47215622
Alignment:
Q  33 ttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacac 81  Q
    ||||| ||||| |||||||| ||| ||||| ||||||||||||||||||    
T  47215670 ttatggttgtcacaaaagttatcaaccaaattagttgttcaaataacac 47215622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 51571301 - 51571238
Alignment:
Q  18 tttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacaca 82  Q
    |||||||||| ||| ||||| ||||||||||| ||||||  | |||| |||||||||||||||||    
T  51571301 tttttctttgtaaaattatggttgtcccaaaaattgtcaatc-aaatggttgttcaaataacaca 51571238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 27546181 - 27546245
Alignment:
Q  17 atttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacaca 82  Q
    ||||||||||| | ||||||||||||| |||||||||||| |  |||||||| |||||||||||||    
T  27546181 atttttctttgtacatttatgattgtctcaaaagttgtca-cacaaatagttattcaaataacaca 27546245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 32912169 - 32912216
Alignment:
Q  33 ttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacac 81  Q
    |||||||||||||||||||||||| || |||| ||||||||||||||||    
T  32912169 ttatgattgtcccaaaagttgtcaacc-aaatggttgttcaaataacac 32912216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 8675387 - 8675326
Alignment:
Q  18 tttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacac 81  Q
    |||||||||| ||||| ||| |||||||||||||||||| || |||| ||||||||||||||||    
T  8675387 tttttctttgtaaatt-atggttgtcccaaaagttgtcaacc-aaatggttgttcaaataacac 8675326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 9226417 - 9226479
Alignment:
Q  18 tttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacac 81  Q
    |||||||||| ||||| || |||||| |||||||||||| ||||| | ||||||||||||||||    
T  9226417 tttttctttgtaaatt-ataattgtcacaaaagttgtcaaccaaattggttgttcaaataacac 9226479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 19839940 - 19839879
Alignment:
Q  18 tttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacac 81  Q
    |||||||||| ||||| ||| |||||||||||||| ||| ||||| ||||||||||||||||||    
T  19839940 tttttctttgtaaatt-atggttgtcccaaaagttatcaaccaaa-tagttgttcaaataacac 19839879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 24405911 - 24405847
Alignment:
Q  17 atttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacaca 82  Q
    ||||||||||| ||||||||  ||||  ||||||||||||  |||| |||||||||||||||||||    
T  24405911 atttttctttgtaaatttatagttgtttcaaaagttgtcaaacaaa-tagttgttcaaataacaca 24405847  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 189643 - 189596
Alignment:
Q  33 ttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacac 81  Q
    |||||||||||||||||||||||| || ||||  |||||||||||||||    
T  189643 ttatgattgtcccaaaagttgtcaacc-aaatgattgttcaaataacac 189596  T

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Target: scaffold0141 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 12049 - 12110
Alignment:
Q  18 tttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacac 81  Q
    |||||||||| ||||| ||| ||||| |||||||||||| ||||| ||||||||||||||||||    
T  12049 tttttctttgtaaatt-atggttgtcgcaaaagttgtcaaccaaa-tagttgttcaaataacac 12110  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 42110137 - 42110075
Alignment:
Q  18 tttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacac 81  Q
    |||||||||| ||||| ||||| ||| || ||||||||| ||||| ||||||||||||||||||    
T  42110137 tttttctttgtaaatt-atgatcgtcacataagttgtcaaccaaattagttgttcaaataacac 42110075  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 37657126 - 37657168
Alignment:
Q  39 ttgtcccaaaagttgtcatccaaaatagttgttcaaataacac 81  Q
    |||||||  |||||||||| |||||||||||||||||||||||    
T  37657126 ttgtccctgaagttgtcatacaaaatagttgttcaaataacac 37657168  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 39856153 - 39856217
Alignment:
Q  17 atttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacaca 82  Q
    |||||||||||  |||| |||||||||  ||||||| ||||  |||||||||||||||||||||||    
T  39856153 atttttctttgttaattcatgattgtcttaaaagttatcatt-aaaatagttgttcaaataacaca 39856217  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 13106596 - 13106659
Alignment:
Q  18 tttttctttgaaaatttatgattgtcccaaaagttgtcatccaaaatagttgttcaaataacaca 82  Q
    |||||||||| ||||||||| ||||   ||||||||||| || |||| |||||||||||||||||    
T  13106596 tttttctttgtaaatttatggttgttataaaagttgtca-cctaaatggttgttcaaataacaca 13106659  T

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