View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_195 (Length: 238)
Name: NF1715_low_195
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_195 |
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| [»] scaffold0341 (3 HSPs) |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: scaffold0341 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 11928 - 12147
Alignment:
| Q |
19 |
cgtgaatcattgtttaatatcgagtctatgatatttgttgcagtcccttccttccaatttctccatgcctgcacaaatttacccaaatgcaaatactact |
118 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11928 |
cgtgaatcattgtttaatgtcgagtctatgatatttgttgcagtcccttccttccaatttctccatgcctgcacaaatttacccaaatgcaaatactact |
12027 |
T |
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| Q |
119 |
ctttgttagatataatttcacttctaaagatgaaagatatgacgacatgaaaagtatgacttacaaagcttgagagatattctgtattctccccatcacg |
218 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12028 |
ctttgttagatataatttcacttctaaacatgaaagatatgacgacatgaaaagtatgacttacaaagcttgagagatattctgtattctccccatcacg |
12127 |
T |
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| Q |
219 |
aatgccactgttttttgcac |
238 |
Q |
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|||||||||||||||||||| |
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| T |
12128 |
aatgccactgttttttgcac |
12147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 4272 - 4399
Alignment:
| Q |
19 |
cgtgaatcattgtttaatatcgagtctatgatatttgttgcagtcccttccttccaatttctccatgcctgcacaaatttacccaaatgcaaatactact |
118 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||| ||| ||||| ||| | | |
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| T |
4272 |
cgtgaatcattgtttaatgtcgagtctatgatatttgttgcagtcccctctctccaatttctccatgcctacacaaatttatccagatgcatatatcatt |
4371 |
T |
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| Q |
119 |
ctttgttagatataatttcacttctaaa |
146 |
Q |
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|| |||||||||||||| |||||||||| |
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| T |
4372 |
ctatgttagatataattccacttctaaa |
4399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 4452 - 4522
Alignment:
| Q |
168 |
aaaagtatgacttacaaagcttgagagatattctgtattctccccatcacgaatgccactgttttttgcac |
238 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||| |
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| T |
4452 |
aaaattatgacttacaaagcttgagagatattctgtattctccccatcacgaatgctactatttttagcac |
4522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 6510248 - 6510467
Alignment:
| Q |
19 |
cgtgaatcattgtttaatatcgagtctatgatatttgttgcagtcccttccttccaatttctccatgcctgcacaaatttacccaaatgcaaatactact |
118 |
Q |
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| T |
6510248 |
cgtgaatcattgtttaaagtagaatctatgataattgttgcagtaccatcaatccaatttctccatgcctgcacaaatttacccaaatgcaaatactact |
6510347 |
T |
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| Q |
119 |
ctttgttagatataatttcacttctaaagatgaaagatatgacgacatgaaaagtatgacttacaaagcttgagagatattctgtattctccccatcacg |
218 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6510348 |
ctttgttagatataatttcacttctaaacatgaaagatatgacgacatgaaaagtatgacttacaaagcttgagagatattctgtattctccccatcacg |
6510447 |
T |
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| Q |
219 |
aatgccactgttttttgcac |
238 |
Q |
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|||||||||||||||||||| |
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| T |
6510448 |
aatgccactgttttttgcac |
6510467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 6502594 - 6502721
Alignment:
| Q |
19 |
cgtgaatcattgtttaatatcgagtctatgatatttgttgcagtcccttccttccaatttctccatgcctgcacaaatttacccaaatgcaaatactact |
118 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||| ||| ||||| ||| | | |
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| T |
6502594 |
cgtgaatcattgtttaatgtcgagtctatgatatttgttgcagtcccctctctccaatttctccatgcctacacaaatttatccagatgcatatatcatt |
6502693 |
T |
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| Q |
119 |
ctttgttagatataatttcacttctaaa |
146 |
Q |
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|| |||||||||||||| |||||||||| |
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| T |
6502694 |
ctatgttagatataattccacttctaaa |
6502721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 6497262 - 6497481
Alignment:
| Q |
19 |
cgtgaatcattgtttaatatcgagtctatgatatttgttgcagtcccttccttccaatttctccatgcctgcacaaatttacccaaatgcaaatactact |
118 |
Q |
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||||||||||||||||| | | ||||||||| |||||||||| || ||||||||||| |||||||||||||||||||| ||||| ||||||| | |
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| T |
6497262 |
cgtgaatcattgtttaacgtgggatctatgatacttgttgcagttccctccttccaattcctccatgcctgcacaaatttgtccaaacgcaaataaaata |
6497361 |
T |
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| Q |
119 |
ctttgttagatataatttcacttctaaagatgaaagatat------gacgacatgaaaagtatgacttacaaagcttgagagatattctgtattctcccc |
212 |
Q |
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|| ||||||||||| | ||||||| | |||||| |||| || ||||| ||||||||||||||||||||| || ||||| || ||||||||| | |
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| T |
6497362 |
ctaggttagatataa-tacacttct--acatgaaatatatgatgacgatgacataaaaagtatgacttacaaagctcgatagatactcagtattctcctc |
6497458 |
T |
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| Q |
213 |
atcacgaatgccactgttttttg |
235 |
Q |
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||| ||||||||||||||||||| |
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| T |
6497459 |
atcgcgaatgccactgttttttg |
6497481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 6502773 - 6502843
Alignment:
| Q |
168 |
aaaagtatgacttacaaagcttgagagatattctgtattctccccatcacgaatgccactgttttttgcac |
238 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||| |
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| T |
6502773 |
aaaattatgacttacaaagcttgagagatattctgtattctccccatcacgaatgctactatttttagcac |
6502843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 6514613 - 6514690
Alignment:
| Q |
20 |
gtgaatcattgtttaatatcgagtctatgatatttgttgcagtcccttccttccaatttctccatgcctgcacaaatt |
97 |
Q |
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| T |
6514613 |
gtgagtcattgtttaatgttggatctatgatatttgctgcagtcccctccttccaatttctccatgcctacacaaatt |
6514690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 235
Target Start/End: Original strand, 6514779 - 6514863
Alignment:
| Q |
151 |
aaagatatgacgacatgaaaagtatgacttacaaagcttgagagatattctgtattctccccatcacgaatgccactgttttttg |
235 |
Q |
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|||||||||| ||||| || |||||||||||||||| ||||||||||| ||||||||||||||||| ||| ||| ||||||| |
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| T |
6514779 |
aaagatatgattgcatgacaattatgacttacaaagctcgagagatattccgtattctccccatcacggatgtaactattttttg |
6514863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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