View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1715_low_198 (Length: 237)
Name: NF1715_low_198
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_198 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 10102407 - 10102186
Alignment:
| Q |
1 |
ttgaaatgactcataaatacagatttgtattttgttgccaaatcctcagtcctcacaccatcaatcaaatctgttatggcattacacccaacctttgttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10102407 |
ttgaaatgactcataaatacagatttgtattttgttgccaaatcctcagtcctcacaccatcaatcaaatctgttatggcattacacccaacctttgttt |
10102308 |
T |
|
| Q |
101 |
taggaaaagagaatggacacatggaatgaagttctaaaagtcatctccaagccttccttgcaagagcgaattgttttttacttatcaaagtcattgtaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10102307 |
taggaaaagagaatggacacatggaatgaagttctaaaagtcatctccaagccttccttgcaagagcgaattgttttttacttatcaaagtcattgtaga |
10102208 |
T |
|
| Q |
201 |
aactctgaatgctttttactat |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
10102207 |
aactctgaatgctttttactat |
10102186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 99 - 222
Target Start/End: Original strand, 9660676 - 9660804
Alignment:
| Q |
99 |
tttaggaaaagagaatggacacatggaatgaagttctaaaagtcatctccaagccttccttgcaagagc-gaattgttttttac----ttatcaaagtca |
193 |
Q |
| |
|
|||| |||||||||| |||||||||| ||||||||||||||||| |||||| |||| ||||||||||| ||||| | ||| || ||||| |||||| |
|
|
| T |
9660676 |
tttaagaaaagagaacggacacatggtgtgaagttctaaaagtcagctccaaaccttgcttgcaagagcagaattctgtttaacaatgttatcgaagtca |
9660775 |
T |
|
| Q |
194 |
ttgtagaaactctgaatgctttttactat |
222 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
9660776 |
ttgtagaaactctgaatgctttttactat |
9660804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 175
Target Start/End: Original strand, 9677735 - 9677863
Alignment:
| Q |
55 |
acaccatcaatcaaatctgttatg---gcattacacccaacctttgttttag----gaaaagagaatggacacatggaatgaagttctaaaagtcatctc |
147 |
Q |
| |
|
|||||||||| ||||| ||||||| |||||| ||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
9677735 |
acaccatcaaacaaatttgttatgatggcattagacccagcctttgttttatttaagaaaagagaatggacacatggtgtgaagttctaaaagtcagctc |
9677834 |
T |
|
| Q |
148 |
caagccttccttgcaagagc-gaattgtt |
175 |
Q |
| |
|
||| |||| |||||||||| |||||||| |
|
|
| T |
9677835 |
caaaccttgtttgcaagagcagaattgtt |
9677863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 12107281 - 12107324
Alignment:
| Q |
179 |
tacttatcaaagtcattgtagaaactctgaatgctttttactat |
222 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
12107281 |
tacttatcaaagtcattgtagcaactctgaatgctttttactat |
12107324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 9659113 - 9659159
Alignment:
| Q |
1 |
ttgaaatgactcataaatacagatttgta-ttttgttgccaaatcct |
46 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||| ||||||| |
|
|
| T |
9659113 |
ttgaaatgactcatgaatacagatttgtatttttgttgctaaatcct |
9659159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 141
Target Start/End: Original strand, 12106377 - 12106413
Alignment:
| Q |
105 |
aaaagagaatggacacatggaatgaagttctaaaagt |
141 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12106377 |
aaaagagaatggacacatggtgtgaagttctaaaagt |
12106413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University