View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1715_low_199 (Length: 236)

Name: NF1715_low_199
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1715_low_199
NF1715_low_199
[»] chr3 (18 HSPs)
chr3 (30-236)||(34628107-34628301)
chr3 (19-64)||(11335328-11335373)
chr3 (19-67)||(19418183-19418231)
chr3 (20-64)||(51032651-51032695)
chr3 (30-64)||(52963353-52963387)
chr3 (19-68)||(7949787-7949836)
chr3 (38-67)||(20893287-20893316)
chr3 (20-65)||(31017421-31017466)
chr3 (19-64)||(36869863-36869908)
chr3 (19-64)||(39604272-39604317)
chr3 (19-64)||(40159864-40159909)
chr3 (34-67)||(52100258-52100291)
chr3 (19-67)||(462427-462475)
chr3 (37-69)||(29555882-29555914)
chr3 (19-67)||(37303100-37303148)
chr3 (19-67)||(41877685-41877733)
chr3 (30-70)||(48352990-48353030)
chr3 (30-66)||(54233505-54233541)
[»] chr6 (12 HSPs)
chr6 (19-64)||(8778898-8778943)
chr6 (19-65)||(28883774-28883820)
chr6 (19-64)||(9188970-9189015)
chr6 (24-64)||(26391316-26391356)
chr6 (34-69)||(16743307-16743342)
chr6 (19-66)||(17835610-17835657)
chr6 (19-61)||(21506339-21506381)
chr6 (30-67)||(1376361-1376398)
chr6 (30-67)||(1384109-1384146)
chr6 (19-64)||(19789102-19789147)
chr6 (37-74)||(27790279-27790316)
chr6 (19-64)||(28965866-28965911)
[»] chr4 (21 HSPs)
chr4 (31-75)||(15985246-15985290)
chr4 (19-70)||(1562562-1562613)
chr4 (20-65)||(3968884-3968929)
chr4 (19-64)||(47998594-47998639)
chr4 (19-68)||(51389100-51389149)
chr4 (20-64)||(35824133-35824177)
chr4 (19-67)||(39881056-39881104)
chr4 (24-67)||(33776844-33776887)
chr4 (19-73)||(24772662-24772716)
chr4 (19-65)||(25725720-25725766)
chr4 (19-61)||(43759177-43759219)
chr4 (19-64)||(12241058-12241103)
chr4 (19-64)||(33820362-33820407)
chr4 (19-64)||(49424846-49424891)
chr4 (19-64)||(55595949-55595994)
chr4 (20-64)||(169529-169573)
chr4 (30-66)||(1796019-1796055)
chr4 (20-68)||(4489825-4489873)
chr4 (30-66)||(4974109-4974145)
chr4 (31-75)||(15984787-15984831)
chr4 (21-65)||(39010165-39010209)
[»] chr8 (12 HSPs)
chr8 (20-66)||(30943866-30943912)
chr8 (19-64)||(12659052-12659097)
chr8 (19-64)||(40719669-40719714)
chr8 (19-66)||(35937538-35937585)
chr8 (19-61)||(6105462-6105504)
chr8 (19-65)||(20473778-20473824)
chr8 (19-65)||(31806298-31806344)
chr8 (19-64)||(6161948-6161993)
chr8 (20-69)||(21273737-21273786)
chr8 (20-65)||(22767131-22767176)
chr8 (30-67)||(30243914-30243951)
chr8 (19-64)||(40102023-40102068)
[»] chr5 (13 HSPs)
chr5 (19-65)||(31708369-31708415)
chr5 (19-68)||(36416088-36416137)
chr5 (31-66)||(22920530-22920565)
chr5 (30-64)||(1293123-1293157)
chr5 (30-68)||(22098251-22098289)
chr5 (19-65)||(32873175-32873221)
chr5 (19-64)||(8897382-8897427)
chr5 (19-64)||(19271859-19271904)
chr5 (19-64)||(29807028-29807073)
chr5 (34-67)||(40829411-40829444)
chr5 (20-64)||(39840736-39840780)
chr5 (19-67)||(40223811-40223859)
chr5 (23-67)||(42699054-42699098)
[»] chr2 (16 HSPs)
chr2 (19-65)||(6639498-6639544)
chr2 (19-64)||(1052522-1052567)
chr2 (19-64)||(11980651-11980696)
chr2 (19-64)||(31635836-31635881)
chr2 (30-65)||(40874298-40874333)
chr2 (19-65)||(36376875-36376921)
chr2 (19-64)||(2308348-2308393)
chr2 (19-64)||(4723566-4723611)
chr2 (19-64)||(7498017-7498062)
chr2 (19-64)||(14797676-14797721)
chr2 (19-64)||(18373847-18373892)
chr2 (19-64)||(31296871-31296916)
chr2 (19-64)||(32749998-32750043)
chr2 (23-64)||(34262048-34262089)
chr2 (20-61)||(43665625-43665666)
chr2 (30-66)||(15123973-15124009)
[»] chr1 (14 HSPs)
chr1 (19-64)||(8905728-8905773)
chr1 (19-64)||(18541077-18541122)
chr1 (30-67)||(47059916-47059953)
chr1 (30-67)||(49020441-49020478)
chr1 (20-64)||(25989011-25989055)
chr1 (20-64)||(44672057-44672101)
chr1 (19-66)||(3606120-3606167)
chr1 (19-66)||(9445106-9445153)
chr1 (19-70)||(25098814-25098865)
chr1 (37-66)||(644699-644728)
chr1 (19-64)||(27810273-27810318)
chr1 (19-56)||(51848888-51848925)
chr1 (19-63)||(9882685-9882729)
chr1 (30-66)||(48872054-48872090)
[»] scaffold0024 (2 HSPs)
scaffold0024 (20-64)||(91948-91992)
scaffold0024 (19-64)||(60469-60514)
[»] chr7 (16 HSPs)
chr7 (31-70)||(42598246-42598285)
chr7 (19-70)||(42663078-42663129)
chr7 (19-65)||(33212041-33212087)
chr7 (30-64)||(39497339-39497373)
chr7 (19-64)||(5378627-5378672)
chr7 (19-64)||(9055267-9055312)
chr7 (19-64)||(19426580-19426625)
chr7 (20-61)||(31436422-31436463)
chr7 (19-64)||(38096465-38096510)
chr7 (19-64)||(47905142-47905187)
chr7 (19-63)||(2756955-2756999)
chr7 (30-66)||(8459612-8459648)
chr7 (20-68)||(34349054-34349102)
chr7 (23-67)||(39369299-39369343)
chr7 (20-64)||(40212516-40212560)
chr7 (30-66)||(48314398-48314434)
[»] scaffold0020 (1 HSPs)
scaffold0020 (19-65)||(155905-155951)
[»] scaffold0172 (1 HSPs)
scaffold0172 (19-68)||(16971-17020)
[»] scaffold0087 (1 HSPs)
scaffold0087 (19-64)||(27089-27134)
[»] scaffold0049 (1 HSPs)
scaffold0049 (19-64)||(72195-72240)


Alignment Details
Target: chr3 (Bit Score: 102; Significance: 9e-51; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 30 - 236
Target Start/End: Original strand, 34628107 - 34628301
Alignment:
Q  30 gttgttaaaaaatggttgtacaaatattatttctcattatagaaatgcacttattatctaggacatgannnnnnnnnnggacgaaagctatttcaaccaa 129  Q
    ||||||||||||||||||||||||||| |||| || ||||||||||||||||||||| ||||||||||          ||| ||||||||||||||||||    
T  34628107 gttgttaaaaaatggttgtacaaatatcatttatc-ttatagaaatgcacttattatttaggacatgattttttttttggaagaaagctatttcaaccaa 34628205  T
Q  130 actaaggataactgattcattctcaagtatatagttcgaggatatttaagatcaaaaacagagtcaaagctcggcagaactggacatatgtgagtctttg 229  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||          ||||||||||||||||||||||||||||||| |||    
T  34628206 actaaggataactgattcattctcaagtatatagttcaaggatctttaagatcaa----------aaagctcggcagaactggacatatgtgagtc-ttg 34628294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 11335328 - 11335373
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    |||||||||| ||||||| ||||||||||||||||||| |||||||    
T  11335328 gttgtcaaaaagttgttagaaaatggttgtacaaatatcatttctc 11335373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 19418183 - 19418231
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctcatt 67  Q
    |||||||||| ||||| | ||||||||||||||||||| ||||||||||    
T  19418183 gttgtcaaaaagttgtcataaaatggttgtacaaatatcatttctcatt 19418231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 51032651 - 51032695
Alignment:
Q  20 ttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    ||||||||| ||||||| ||||||||||||||||||| |||||||    
T  51032651 ttgtcaaaaagttgttagaaaatggttgtacaaatatcatttctc 51032695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 64
Target Start/End: Original strand, 52963353 - 52963387
Alignment:
Q  30 gttgttaaaaaatggttgtacaaatattatttctc 64  Q
    ||||||||||||||||||||||||||| |||||||    
T  52963353 gttgttaaaaaatggttgtacaaatatcatttctc 52963387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 7949836 - 7949787
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctcatta 68  Q
    |||||||||| |||||   ||||||||||||||||||| |||||||||||    
T  7949836 gttgtcaaaaagttgtagcaaaatggttgtacaaatatcatttctcatta 7949787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 67
Target Start/End: Original strand, 20893287 - 20893316
Alignment:
Q  38 aaaatggttgtacaaatattatttctcatt 67  Q
    ||||||||||||||||||||||||||||||    
T  20893287 aaaatggttgtacaaatattatttctcatt 20893316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 31017421 - 31017466
Alignment:
Q  20 ttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctca 65  Q
    ||||||||| ||||||| |||||| |||||||||||| ||||||||    
T  31017421 ttgtcaaaaagttgttagaaaatgattgtacaaatatcatttctca 31017466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 36869863 - 36869908
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    |||||| ||| ||||| ||||||||||||||||||||| |||||||    
T  36869863 gttgtctaaaagttgtcaaaaaatggttgtacaaatatcatttctc 36869908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 39604272 - 39604317
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    ||||||||||  ||||| |||||||||||||||||||| |||||||    
T  39604272 gttgtcaaaaaattgttgaaaaatggttgtacaaatatcatttctc 39604317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 40159864 - 40159909
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    |||||||||| ||||||| ||||| ||||||||||||| |||||||    
T  40159864 gttgtcaaaaagttgttagaaaatagttgtacaaatatcatttctc 40159909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 52100291 - 52100258
Alignment:
Q  34 ttaaaaaatggttgtacaaatattatttctcatt 67  Q
    ||||||||||||||||||||||| ||||||||||    
T  52100291 ttaaaaaatggttgtacaaatatcatttctcatt 52100258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 462427 - 462475
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctcatt 67  Q
    |||||| ||| ||||| | ||||||||||||||||||| ||||||||||    
T  462427 gttgtctaaaagttgtcacaaaatggttgtacaaatatcatttctcatt 462475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 69
Target Start/End: Original strand, 29555882 - 29555914
Alignment:
Q  37 aaaaatggttgtacaaatattatttctcattat 69  Q
    |||||||||||||||||||||||||||| ||||    
T  29555882 aaaaatggttgtacaaatattatttctctttat 29555914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 37303100 - 37303148
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctcatt 67  Q
    |||||||||| ||||| | ||| ||||||||||||||| ||||||||||    
T  37303100 gttgtcaaaaagttgtgagaaagtggttgtacaaatatcatttctcatt 37303148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 41877733 - 41877685
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctcatt 67  Q
    |||||||||| |||||   ||||||||||||||||||| ||||||||||    
T  41877733 gttgtcaaaaagttgtagcaaaatggttgtacaaatatcatttctcatt 41877685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 48353030 - 48352990
Alignment:
Q  30 gttgttaaaaaatggttgtacaaatattatttctcattata 70  Q
    ||||||||||||||| ||||||||||| |||||||| ||||    
T  48353030 gttgttaaaaaatggatgtacaaatatcatttctcaatata 48352990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 54233505 - 54233541
Alignment:
Q  30 gttgttaaaaaatggttgtacaaatattatttctcat 66  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  54233505 gttgtaaaaaaatggttgtacaaatatcatttctcat 54233541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 8778898 - 8778943
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||    
T  8778898 gttgtcaaaaagttgttaaaaaatggttgtacaaatatcatttctc 8778943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 28883774 - 28883820
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctca 65  Q
    |||||||||| ||| ||||||||||||||||||||||| ||||||||    
T  28883774 gttgtcaaaaggttattaaaaaatggttgtacaaatatcatttctca 28883820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 9188970 - 9189015
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    |||||| ||| ||||||||||||||||||||||||||| |||||||    
T  9188970 gttgtctaaaagttgttaaaaaatggttgtacaaatatcatttctc 9189015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 26391316 - 26391356
Alignment:
Q  24 caaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    ||||| ||||||||||||||||||||||||||| |||||||    
T  26391316 caaaaagttgttaaaaaatggttgtacaaatatcatttctc 26391356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 69
Target Start/End: Original strand, 16743307 - 16743342
Alignment:
Q  34 ttaaaaaatggttgtacaaatattatttctcattat 69  Q
    ||||||||||||||||||||||| ||||||||||||    
T  16743307 ttaaaaaatggttgtacaaatatcatttctcattat 16743342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 17835657 - 17835610
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctcat 66  Q
    |||||||||| ||||||| |||| |||||||||||||| |||||||||    
T  17835657 gttgtcaaaaagttgttagaaaagggttgtacaaatatcatttctcat 17835610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 21506381 - 21506339
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattattt 61  Q
    |||||||||| ||||| ||||||||||||||||||||| ||||    
T  21506381 gttgtcaaaaagttgtcaaaaaatggttgtacaaatatcattt 21506339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 1376398 - 1376361
Alignment:
Q  30 gttgttaaaaaatggttgtacaaatattatttctcatt 67  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  1376398 gttgttagaaaatggttgtacaaatataatttctcatt 1376361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 1384146 - 1384109
Alignment:
Q  30 gttgttaaaaaatggttgtacaaatattatttctcatt 67  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  1384146 gttgttagaaaatggttgtacaaatataatttctcatt 1384109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 19789102 - 19789147
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    |||||||||| ||||| | ||||||||||||||||||| |||||||    
T  19789102 gttgtcaaaaagttgtaataaaatggttgtacaaatatcatttctc 19789147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 27790279 - 27790316
Alignment:
Q  37 aaaaatggttgtacaaatattatttctcattatagaaa 74  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  27790279 aaaaatggttgtacaaatatcatttctcattaaagaaa 27790316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 28965866 - 28965911
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    |||||||||| ||||| | ||||||||||||||||||| |||||||    
T  28965866 gttgtcaaaaagttgtaacaaaatggttgtacaaatatcatttctc 28965911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 15985290 - 15985246
Alignment:
Q  31 ttgttaaaaaatggttgtacaaatattatttctcattatagaaat 75  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||    
T  15985290 ttgttaaaaaatggttgtacaaatattatttctcatgataaaaat 15985246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 1562562 - 1562613
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctcattata 70  Q
    |||||||||| ||||||| ||||||||||||||||||| ||||||| |||||    
T  1562562 gttgtcaaaaagttgttagaaaatggttgtacaaatatcatttctctttata 1562613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 3968929 - 3968884
Alignment:
Q  20 ttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctca 65  Q
    ||||||||| ||||||| ||||||||||||||||||| ||||||||    
T  3968929 ttgtcaaaaagttgttagaaaatggttgtacaaatatcatttctca 3968884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 47998639 - 47998594
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    |||||||||| ||||||| ||||||||||||||||||| |||||||    
T  47998639 gttgtcaaaaagttgttacaaaatggttgtacaaatatcatttctc 47998594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 51389100 - 51389149
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctcatta 68  Q
    |||||||||| ||||||| ||| ||||||||||||||| |||||||||||    
T  51389100 gttgtcaaaaagttgttacaaagtggttgtacaaatatcatttctcatta 51389149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 35824133 - 35824177
Alignment:
Q  20 ttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    ||||| ||| ||||||||||||||||||||||||||| |||||||    
T  35824133 ttgtccaaaagttgttaaaaaatggttgtacaaatatcatttctc 35824177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 39881056 - 39881104
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctcatt 67  Q
    |||||||||| ||||||| |||||| |||||||||||| ||||||||||    
T  39881056 gttgtcaaaaagttgttagaaaatgattgtacaaatatcatttctcatt 39881104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 33776844 - 33776887
Alignment:
Q  24 caaaatgttgttaaaaaatggttgtacaaatattatttctcatt 67  Q
    ||||| ||||||| ||||||||||||||||||| ||||||||||    
T  33776844 caaaaggttgttagaaaatggttgtacaaatatcatttctcatt 33776887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 24772716 - 24772662
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctcattatagaa 73  Q
    |||||||||| ||||| | ||||||| ||||||||||| |||||||| |||||||    
T  24772716 gttgtcaaaaagttgtcataaaatggatgtacaaatatcatttctcaatatagaa 24772662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 25725720 - 25725766
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctca 65  Q
    |||||||||| ||||||| ||| ||||||||||||||| ||||||||    
T  25725720 gttgtcaaaaagttgttagaaagtggttgtacaaatatcatttctca 25725766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 43759177 - 43759219
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattattt 61  Q
    ||||||||||  |||||| ||||||||||||||||||||||||    
T  43759177 gttgtcaaaaaattgttagaaaatggttgtacaaatattattt 43759219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 12241103 - 12241058
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    |||||||||| ||||||| ||||| ||||||||||||| |||||||    
T  12241103 gttgtcaaaaagttgttagaaaatagttgtacaaatatcatttctc 12241058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 33820362 - 33820407
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    |||||||||| ||||||| ||||| ||||||||||||| |||||||    
T  33820362 gttgtcaaaaagttgttagaaaatagttgtacaaatatcatttctc 33820407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 49424846 - 49424891
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    |||||||||| ||||||| |||| |||||||||||||| |||||||    
T  49424846 gttgtcaaaaagttgttacaaaaaggttgtacaaatatcatttctc 49424891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 55595994 - 55595949
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    |||||||||| ||||||| ||| ||||||||||||||| |||||||    
T  55595994 gttgtcaaaaagttgttagaaattggttgtacaaatatcatttctc 55595949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 169529 - 169573
Alignment:
Q  20 ttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    ||||||||| ||||| | ||||||||||||||||||| |||||||    
T  169529 ttgtcaaaaagttgtcacaaaatggttgtacaaatatcatttctc 169573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 1796019 - 1796055
Alignment:
Q  30 gttgttaaaaaatggttgtacaaatattatttctcat 66  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  1796019 gttgttaaaaaattgttgtacaaatatcatttctcat 1796055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 4489825 - 4489873
Alignment:
Q  20 ttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctcatta 68  Q
    |||||||||  |||||| ||||||||| ||||||||| |||||||||||    
T  4489825 ttgtcaaaaaattgttagaaaatggttatacaaatatcatttctcatta 4489873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 4974145 - 4974109
Alignment:
Q  30 gttgttaaaaaatggttgtacaaatattatttctcat 66  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  4974145 gttgttaaaaaatagttgtacaaatatcatttctcat 4974109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 15984787 - 15984831
Alignment:
Q  31 ttgttaaaaaatggttgtacaaatattatttctcattatagaaat 75  Q
    |||||||||||| ||||||||||||| ||||||||| ||| ||||    
T  15984787 ttgttaaaaaatagttgtacaaatataatttctcatgataaaaat 15984831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 39010165 - 39010209
Alignment:
Q  21 tgtcaaaatgttgttaaaaaatggttgtacaaatattatttctca 65  Q
    |||||||| ||||| | ||||||||||||||||||| ||||||||    
T  39010165 tgtcaaaaagttgtcacaaaatggttgtacaaatatcatttctca 39010209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 30943866 - 30943912
Alignment:
Q  20 ttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctcat 66  Q
    ||||||||| ||||||||||| ||||||||||||||| |||||||||    
T  30943866 ttgtcaaaaagttgttaaaaattggttgtacaaatatcatttctcat 30943912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 12659097 - 12659052
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    |||||||||| ||||||||||| ||||||||||||||| |||||||    
T  12659097 gttgtcaaaaagttgttaaaaattggttgtacaaatatcatttctc 12659052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 40719669 - 40719714
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    |||||||||| ||||||| ||||||||||||||||||| |||||||    
T  40719669 gttgtcaaaaggttgttagaaaatggttgtacaaatatcatttctc 40719714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 35937538 - 35937585
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctcat 66  Q
    |||||| ||| ||||||| ||||||||||||||||||| |||||||||    
T  35937538 gttgtccaaaagttgttacaaaatggttgtacaaatatcatttctcat 35937585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 6105462 - 6105504
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattattt 61  Q
    |||||||||| ||||| ||||||||||||||||||||| ||||    
T  6105462 gttgtcaaaaagttgtaaaaaaatggttgtacaaatatcattt 6105504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 20473824 - 20473778
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctca 65  Q
    ||||||||||  |||||| ||||||||||||||||||| ||||||||    
T  20473824 gttgtcaaaaaattgttataaaatggttgtacaaatatcatttctca 20473778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 31806344 - 31806298
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctca 65  Q
    ||||||||||  |||||| ||||||||||||||||||| ||||||||    
T  31806344 gttgtcaaaaaattgttagaaaatggttgtacaaatatcatttctca 31806298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 6161993 - 6161948
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    |||||||||| ||||| | ||||||||||||||||||| |||||||    
T  6161993 gttgtcaaaaggttgtcataaaatggttgtacaaatatcatttctc 6161948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 21273737 - 21273786
Alignment:
Q  20 ttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctcattat 69  Q
    ||||||| | ||||| | ||||||||||||||||||| ||||||||||||    
T  21273737 ttgtcaagaagttgtcacaaaatggttgtacaaatatcatttctcattat 21273786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 22767176 - 22767131
Alignment:
Q  20 ttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctca 65  Q
    ||||||||| ||||| | ||||||||||||||||||| ||||||||    
T  22767176 ttgtcaaaaagttgtgagaaaatggttgtacaaatatcatttctca 22767131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 30243951 - 30243914
Alignment:
Q  30 gttgttaaaaaatggttgtacaaatattatttctcatt 67  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  30243951 gttgtttaaaattggttgtacaaatattatttctcatt 30243914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 40102068 - 40102023
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    |||||||||| ||||| ||||| ||||||||||||||| |||||||    
T  40102068 gttgtcaaaaagttgtgaaaaagtggttgtacaaatatcatttctc 40102023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 31708415 - 31708369
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctca 65  Q
    |||||||||| ||||||| ||||||||||||||||||| ||||||||    
T  31708415 gttgtcaaaaagttgttataaaatggttgtacaaatatcatttctca 31708369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 36416088 - 36416137
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctcatta 68  Q
    ||||||||||  |||||| ||||||||||||||||||| |||||||||||    
T  36416088 gttgtcaaaaaattgttagaaaatggttgtacaaatatcatttctcatta 36416137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 66
Target Start/End: Original strand, 22920530 - 22920565
Alignment:
Q  31 ttgttaaaaaatggttgtacaaatattatttctcat 66  Q
    |||||| |||||||||||||||||||||||||||||    
T  22920530 ttgttacaaaatggttgtacaaatattatttctcat 22920565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 64
Target Start/End: Original strand, 1293123 - 1293157
Alignment:
Q  30 gttgttaaaaaatggttgtacaaatattatttctc 64  Q
    ||||||||||||||||||||||||||| |||||||    
T  1293123 gttgttaaaaaatggttgtacaaatatcatttctc 1293157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 22098289 - 22098251
Alignment:
Q  30 gttgttaaaaaatggttgtacaaatattatttctcatta 68  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  22098289 gttgttagaaaatggttgtacaaatatcatttctcatta 22098251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 32873175 - 32873221
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctca 65  Q
    |||||||||| ||||||| ||| ||||||||||||||| ||||||||    
T  32873175 gttgtcaaaaagttgttagaaattggttgtacaaatatcatttctca 32873221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 8897427 - 8897382
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    |||||||||| ||||| | ||||||||||||||||||| |||||||    
T  8897427 gttgtcaaaaggttgtcataaaatggttgtacaaatatcatttctc 8897382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 19271904 - 19271859
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    |||||| ||| ||||||| ||||||||||||||||||| |||||||    
T  19271904 gttgtctaaacgttgttacaaaatggttgtacaaatatcatttctc 19271859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 29807028 - 29807073
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    ||||||||||  |||||||||||||||||||||||| | |||||||    
T  29807028 gttgtcaaaagattgttaaaaaatggttgtacaaatgtcatttctc 29807073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 40829444 - 40829411
Alignment:
Q  34 ttaaaaaatggttgtacaaatattatttctcatt 67  Q
    ||||||||||||||||||||||| ||||||||||    
T  40829444 ttaaaaaatggttgtacaaatatcatttctcatt 40829411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 39840736 - 39840780
Alignment:
Q  20 ttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    ||||||||| ||||| | ||| |||||||||||||||||||||||    
T  39840736 ttgtcaaaaagttgtaataaagtggttgtacaaatattatttctc 39840780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 40223811 - 40223859
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctcatt 67  Q
    |||||||||| ||||| | ||| ||||||||||||||| ||||||||||    
T  40223811 gttgtcaaaaagttgtcacaaagtggttgtacaaatataatttctcatt 40223859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 42699098 - 42699054
Alignment:
Q  23 tcaaaatgttgttaaaaaatggttgtacaaatattatttctcatt 67  Q
    |||||| ||||| | ||||||||||||||||||| ||||||||||    
T  42699098 tcaaaaagttgtcacaaaatggttgtacaaatatcatttctcatt 42699054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 6639498 - 6639544
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctca 65  Q
    ||||| |||| ||||||| ||||||||||||||||||||||||||||    
T  6639498 gttgttaaaaagttgttagaaaatggttgtacaaatattatttctca 6639544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 1052522 - 1052567
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    |||||| ||| ||||||||||||||||||||||||||| |||||||    
T  1052522 gttgtctaaaagttgttaaaaaatggttgtacaaatatcatttctc 1052567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 11980696 - 11980651
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    |||||||||| ||||||| ||||||||||||||||||| |||||||    
T  11980696 gttgtcaaaaagttgttagaaaatggttgtacaaatatcatttctc 11980651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 31635836 - 31635881
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    |||||||||| ||||||| ||||||||||||||||||| |||||||    
T  31635836 gttgtcaaaaagttgttagaaaatggttgtacaaatatcatttctc 31635881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 40874298 - 40874333
Alignment:
Q  30 gttgttaaaaaatggttgtacaaatattatttctca 65  Q
    ||||||||||||||||||||||||||| ||||||||    
T  40874298 gttgttaaaaaatggttgtacaaatatcatttctca 40874333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 36376875 - 36376921
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctca 65  Q
    ||||||||||||||||  |||| ||||||||||||||| ||||||||    
T  36376875 gttgtcaaaatgttgtacaaaagtggttgtacaaatatcatttctca 36376921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 2308348 - 2308393
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    |||||||||| ||||| ||||| ||||||||||||||| |||||||    
T  2308348 gttgtcaaaaggttgtcaaaaattggttgtacaaatatcatttctc 2308393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 4723611 - 4723566
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    ||||| |||| |||||||||||||||||||||| |||| |||||||    
T  4723611 gttgtaaaaaagttgttaaaaaatggttgtacatatatcatttctc 4723566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 7498017 - 7498062
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    |||||||||| ||||| | ||||||||||||||||||| |||||||    
T  7498017 gttgtcaaaaagttgtaataaaatggttgtacaaatatcatttctc 7498062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 14797676 - 14797721
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    |||||||||| ||||||| ||| ||||||||||||||| |||||||    
T  14797676 gttgtcaaaaagttgttagaaattggttgtacaaatatcatttctc 14797721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 18373892 - 18373847
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    |||||||||||||||| | |||||| |||||||||||| |||||||    
T  18373892 gttgtcaaaatgttgtcataaaatgattgtacaaatatcatttctc 18373847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 31296871 - 31296916
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    |||||||||| ||||| | ||||||||||||||||||| |||||||    
T  31296871 gttgtcaaaacgttgtcacaaaatggttgtacaaatatcatttctc 31296916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 32750043 - 32749998
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    |||||||||| ||||| ||||| ||||||||||||||| |||||||    
T  32750043 gttgtcaaaaagttgtgaaaaagtggttgtacaaatatcatttctc 32749998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 34262048 - 34262089
Alignment:
Q  23 tcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    |||||| ||||| | |||||||||||||||||||||||||||    
T  34262048 tcaaaaggttgtaataaaatggttgtacaaatattatttctc 34262089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 43665666 - 43665625
Alignment:
Q  20 ttgtcaaaatgttgttaaaaaatggttgtacaaatattattt 61  Q
    ||||||||| ||||||||||| ||||||||||||||| ||||    
T  43665666 ttgtcaaaaagttgttaaaaagtggttgtacaaatatcattt 43665625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 15123973 - 15124009
Alignment:
Q  30 gttgttaaaaaatggttgtacaaatattatttctcat 66  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  15123973 gttgtcaaaaaatggttgtacaaatatcatttctcat 15124009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 8905773 - 8905728
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    |||||||||| ||||||||||||| ||||||||||||| |||||||    
T  8905773 gttgtcaaaaggttgttaaaaaatagttgtacaaatatcatttctc 8905728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 18541077 - 18541122
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    |||||||||| ||||||| ||||||||||||||||||| |||||||    
T  18541077 gttgtcaaaaagttgttagaaaatggttgtacaaatatcatttctc 18541122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 47059916 - 47059953
Alignment:
Q  30 gttgttaaaaaatggttgtacaaatattatttctcatt 67  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  47059916 gttgttaaaaaatggttgtacaaatatcatttctcatt 47059953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 49020441 - 49020478
Alignment:
Q  30 gttgttaaaaaatggttgtacaaatattatttctcatt 67  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  49020441 gttgttaaaaaatggttgtacaaatatcatttctcatt 49020478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 25989011 - 25989055
Alignment:
Q  20 ttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    ||||| ||| ||||||||||||||||||||||||||| |||||||    
T  25989011 ttgtctaaaagttgttaaaaaatggttgtacaaatatcatttctc 25989055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 44672057 - 44672101
Alignment:
Q  20 ttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    ||||||||| |||||||||||||| |||||||||||| |||||||    
T  44672057 ttgtcaaaaagttgttaaaaaatgattgtacaaatatcatttctc 44672101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 3606120 - 3606167
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctcat 66  Q
    |||||||||| ||||||| ||| ||||||||||||||| |||||||||    
T  3606120 gttgtcaaaaagttgttagaaattggttgtacaaatatcatttctcat 3606167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 9445153 - 9445106
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctcat 66  Q
    |||||||||| ||||||| ||||||||||||| ||||| |||||||||    
T  9445153 gttgtcaaaaagttgttacaaaatggttgtacgaatatcatttctcat 9445106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 25098814 - 25098865
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctcattata 70  Q
    |||||| ||| ||||||| ||| ||||||||||||||| |||||||||||||    
T  25098814 gttgtctaaaagttgttacaaagtggttgtacaaatatcatttctcattata 25098865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 644728 - 644699
Alignment:
Q  37 aaaaatggttgtacaaatattatttctcat 66  Q
    ||||||||||||||||||||||||||||||    
T  644728 aaaaatggttgtacaaatattatttctcat 644699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 27810273 - 27810318
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    |||||||||| ||||||| ||| ||||||||||||||| |||||||    
T  27810273 gttgtcaaaaagttgttagaaattggttgtacaaatatcatttctc 27810318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 51848925 - 51848888
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatat 56  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  51848925 gttgtcaaaaagttgttagaaaatggttgtacaaatat 51848888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 9882685 - 9882729
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttct 63  Q
    |||||||||||||||| | ||||| ||||||||||||| ||||||    
T  9882685 gttgtcaaaatgttgtcacaaaatagttgtacaaatatcatttct 9882729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 48872054 - 48872090
Alignment:
Q  30 gttgttaaaaaatggttgtacaaatattatttctcat 66  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  48872054 gttgtcaaaaaatggttgtacaaatatcatttctcat 48872090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 91992 - 91948
Alignment:
Q  20 ttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    ||||||||| ||||||| ||| |||||||||||||||||||||||    
T  91992 ttgtcaaaaagttgttagaaagtggttgtacaaatattatttctc 91948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 60514 - 60469
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    |||||||||| ||||| | ||||||||||||||||||| |||||||    
T  60514 gttgtcaaaaagttgtaataaaatggttgtacaaatatcatttctc 60469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 70
Target Start/End: Original strand, 42598246 - 42598285
Alignment:
Q  31 ttgttaaaaaatggttgtacaaatattatttctcattata 70  Q
    |||||||||||| ||||||||||||| |||||||||||||    
T  42598246 ttgttaaaaaatagttgtacaaatatcatttctcattata 42598285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 42663129 - 42663078
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctcattata 70  Q
    |||||||||| ||||| | ||||||| ||||||||||| |||||||||||||    
T  42663129 gttgtcaaaaagttgtcacaaaatggatgtacaaatatcatttctcattata 42663078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 33212087 - 33212041
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctca 65  Q
    ||||||||||  |||||| ||||||||||||||||||| ||||||||    
T  33212087 gttgtcaaaaaattgttagaaaatggttgtacaaatatcatttctca 33212041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 64
Target Start/End: Original strand, 39497339 - 39497373
Alignment:
Q  30 gttgttaaaaaatggttgtacaaatattatttctc 64  Q
    ||||||||||||||||||||||||||| |||||||    
T  39497339 gttgttaaaaaatggttgtacaaatatcatttctc 39497373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 5378672 - 5378627
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    |||||||||| |||||  |||||||||||||||||||| |||||||    
T  5378672 gttgtcaaaaagttgtataaaaatggttgtacaaatatcatttctc 5378627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 9055312 - 9055267
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    |||||||||| ||||||| ||| ||||||||||||||| |||||||    
T  9055312 gttgtcaaaaagttgttagaaattggttgtacaaatatcatttctc 9055267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 19426625 - 19426580
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    |||||||||| ||||| | ||||||||||||||||||| |||||||    
T  19426625 gttgtcaaaaagttgtcacaaaatggttgtacaaatatcatttctc 19426580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 31436463 - 31436422
Alignment:
Q  20 ttgtcaaaatgttgttaaaaaatggttgtacaaatattattt 61  Q
    ||||||||| ||||| ||||||||||||||||||||| ||||    
T  31436463 ttgtcaaaaagttgtcaaaaaatggttgtacaaatatcattt 31436422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 38096465 - 38096510
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    ||||||||||  |||| | |||||||||||||||||||||||||||    
T  38096465 gttgtcaaaaaattgtcacaaaatggttgtacaaatattatttctc 38096510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 47905142 - 47905187
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    |||||| |||| |||| ||||||||||||||||||||| |||||||    
T  47905142 gttgtctaaatattgtcaaaaaatggttgtacaaatatcatttctc 47905187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 2756955 - 2756999
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttct 63  Q
    |||||||||| ||||||| ||| ||||||||||||||| ||||||    
T  2756955 gttgtcaaaaagttgttagaaattggttgtacaaatatcatttct 2756999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 8459648 - 8459612
Alignment:
Q  30 gttgttaaaaaatggttgtacaaatattatttctcat 66  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  8459648 gttgttaaaaagtggttgtacaaatatcatttctcat 8459612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 34349054 - 34349102
Alignment:
Q  20 ttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctcatta 68  Q
    ||||||||| |||||  |||||||||||||||||||| |||||| ||||    
T  34349054 ttgtcaaaaagttgtacaaaaatggttgtacaaatatcatttcttatta 34349102  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 39369343 - 39369299
Alignment:
Q  23 tcaaaatgttgttaaaaaatggttgtacaaatattatttctcatt 67  Q
    |||||| ||||||| |||| |||||||||||||| ||||||||||    
T  39369343 tcaaaaagttgttacaaaagggttgtacaaatatcatttctcatt 39369299  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 40212516 - 40212560
Alignment:
Q  20 ttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    |||||||||  |||||| ||| |||||||||||||||||||||||    
T  40212516 ttgtcaaaaaattgttagaaagtggttgtacaaatattatttctc 40212560  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 48314398 - 48314434
Alignment:
Q  30 gttgttaaaaaatggttgtacaaatattatttctcat 66  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  48314398 gttgttaaaaagtggttgtacaaatatcatttctcat 48314434  T

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Target: scaffold0020 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 155951 - 155905
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctca 65  Q
    |||||||||| ||||| | ||||||||||||||||||| ||||||||    
T  155951 gttgtcaaaaagttgtaataaaatggttgtacaaatatcatttctca 155905  T

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Target: scaffold0172 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 17020 - 16971
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctcatta 68  Q
    |||||||||| |||||   ||||||||||||||||||| |||||||||||    
T  17020 gttgtcaaaaagttgtagtaaaatggttgtacaaatatcatttctcatta 16971  T

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Target: scaffold0087 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 27089 - 27134
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    ||||||||||  ||||||| |||||||||||||||||| |||||||    
T  27089 gttgtcaaaagattgttaagaaatggttgtacaaatatcatttctc 27134  T

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Target: scaffold0049 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 72195 - 72240
Alignment:
Q  19 gttgtcaaaatgttgttaaaaaatggttgtacaaatattatttctc 64  Q
    |||||| ||| ||||||| ||||||||||||||||||| |||||||    
T  72195 gttgtctaaaagttgttacaaaatggttgtacaaatatcatttctc 72240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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