View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1715_low_2 (Length: 698)

Name: NF1715_low_2
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1715_low_2
NF1715_low_2
[»] chr3 (13 HSPs)
chr3 (438-680)||(8400155-8400397)
chr3 (11-85)||(5356531-5356605)
chr3 (11-85)||(5363173-5363247)
chr3 (11-85)||(5368389-5368463)
chr3 (11-85)||(5374943-5375017)
chr3 (11-70)||(5369222-5369281)
chr3 (491-556)||(5368737-5368802)
chr3 (491-556)||(5374494-5374559)
chr3 (490-556)||(5367931-5367997)
chr3 (260-304)||(5362958-5363002)
chr3 (260-304)||(5368174-5368218)
chr3 (330-390)||(5368897-5368957)
chr3 (260-304)||(7178499-7178543)
[»] chr8 (2 HSPs)
chr8 (490-555)||(30054956-30055021)
chr8 (238-310)||(30054738-30054810)
[»] chr7 (1 HSPs)
chr7 (506-556)||(6889421-6889471)


Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-129; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 438 - 680
Target Start/End: Original strand, 8400155 - 8400397
Alignment:
Q  438 gacaattgagagaattcggaaataaaattttgcgataaaggccaagagtaaggtgaagagaaaggtgaagagaagttaaagtttgagatgaaaataagaa 537  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8400155 gacaattgagagaattcggaaataaaattttgcgataaaggccaagagtaaggtgaagagaaaggtgaagagaagttaaagtttgagatgaaaataagaa 8400254  T
Q  538 agatggaaattgttgaatacttttacaagttatagtgattcctaatagctggacacgatgtgaaacagcgaattctacaatactttgaaatactttggat 637  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8400255 agatggaaattgttgaataccttaacaagttatagtgattcctaatagctggacacgatgtgaaacagcgaattctacaatactttgaaatactttggat 8400354  T
Q  638 tccacaaaaccgtgattgtcatgaaaatgaagagtggggagtg 680  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  8400355 tccacaaaaccgtgattgtcatgaaaatgaagagtggggagtg 8400397  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 5356605 - 5356531
Alignment:
Q  11 gaagaatattagaagagagtgtcaatgatttgacattagcaagctctagcagccagctgaggaggattgcagaat 85  Q
    ||||| |||||||||||| |||||||||||| | ||| ||||||||||||||||||||||| |||| ||||||||    
T  5356605 gaagagtattagaagagactgtcaatgattttatattggcaagctctagcagccagctgagtaggactgcagaat 5356531  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 5363247 - 5363173
Alignment:
Q  11 gaagaatattagaagagagtgtcaatgatttgacattagcaagctctagcagccagctgaggaggattgcagaat 85  Q
    ||||| |||||||||||| ||| |||||||||| |||||||||||| |||||||||||||| ||| |||||||||    
T  5363247 gaagagtattagaagagactgttaatgatttgatattagcaagctcaagcagccagctgagtagggttgcagaat 5363173  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 5368463 - 5368389
Alignment:
Q  11 gaagaatattagaagagagtgtcaatgatttgacattagcaagctctagcagccagctgaggaggattgcagaat 85  Q
    ||||| |||||||||||| ||| |||||||||| |||||||||||| |||||||||||||| ||| |||||||||    
T  5368463 gaagagtattagaagagactgttaatgatttgatattagcaagctcgagcagccagctgagtagggttgcagaat 5368389  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 5375017 - 5374943
Alignment:
Q  11 gaagaatattagaagagagtgtcaatgatttgacattagcaagctctagcagccagctgaggaggattgcagaat 85  Q
    ||||| |||||||||||| ||| |||||||||| ||||||||||||||||||||||||||  ||| |||||||||    
T  5375017 gaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaatagggttgcagaat 5374943  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 5369281 - 5369222
Alignment:
Q  11 gaagaatattagaagagagtgtcaatgatttgacattagcaagctctagcagccagctga 70  Q
    ||||| |||||||||||| |||||||||||||| ||||||||||||| ||||||||||||    
T  5369281 gaagagtattagaagagactgtcaatgatttgatattagcaagctcttgcagccagctga 5369222  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 491 - 556
Target Start/End: Complemental strand, 5368802 - 5368737
Alignment:
Q  491 tgaagagaaaggtgaagagaagttaaagtttgagatgaaaataagaaagatggaaattgttgaata 556  Q
    |||| |||||||| ||| || |||||||||||||||||||||||| |||| |||| ||||||||||    
T  5368802 tgaatagaaaggtcaagtgacgttaaagtttgagatgaaaataagcaagacggaagttgttgaata 5368737  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 491 - 556
Target Start/End: Complemental strand, 5374559 - 5374494
Alignment:
Q  491 tgaagagaaaggtgaagagaagttaaagtttgagatgaaaataagaaagatggaaattgttgaata 556  Q
    |||| |||||||| ||| || |||||||||||||||||||||||| |||| |||| ||||||||||    
T  5374559 tgaatagaaaggtcaagtgacgttaaagtttgagatgaaaataagcaagacggaagttgttgaata 5374494  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 490 - 556
Target Start/End: Complemental strand, 5367997 - 5367931
Alignment:
Q  490 gtgaagagaaaggtgaagagaagttaaagtttgagatgaaaataagaaagatggaaattgttgaata 556  Q
    ||||| |||||||| |||||| ||||| ||||||||||||||||||  |||  ||| ||||||||||    
T  5367997 gtgaatagaaaggtcaagagacgttaaggtttgagatgaaaataagctagactgaagttgttgaata 5367931  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 5363002 - 5362958
Alignment:
Q  260 atagttaaattgacaagtgtggtacttgatatacaaagaatttgt 304  Q
    |||||||| |||||||| || |||||||||||||||||| |||||    
T  5363002 atagttaagttgacaagcgttgtacttgatatacaaagactttgt 5362958  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 5368218 - 5368174
Alignment:
Q  260 atagttaaattgacaagtgtggtacttgatatacaaagaatttgt 304  Q
    |||||||| |||||||| || |||||||||||||||||| |||||    
T  5368218 atagttaagttgacaagcgttgtacttgatatacaaagactttgt 5368174  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 330 - 390
Target Start/End: Complemental strand, 5368957 - 5368897
Alignment:
Q  330 gaatgaccaaagtatgcaactggttaaaggaagagaagggctcagcgcaaccatcatcacc 390  Q
    |||||| |||||||| ||||| ||| ||||  |||||||| ||||| ||||||||||||||    
T  5368957 gaatgatcaaagtattcaacttgttcaaggttgagaagggttcagcacaaccatcatcacc 5368897  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 7178543 - 7178499
Alignment:
Q  260 atagttaaattgacaagtgtggtacttgatatacaaagaatttgt 304  Q
    |||||||||||||||||||||  |||||||||||| |||| ||||    
T  7178543 atagttaaattgacaagtgtgaaacttgatatacatagaacttgt 7178499  T

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Target: chr8 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 490 - 555
Target Start/End: Original strand, 30054956 - 30055021
Alignment:
Q  490 gtgaagagaaaggtgaagagaagttaaagtttgagatgaaaataagaaagatggaaattgttgaat 555  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||| ||| |||||    
T  30054956 gtgaatagaaaggtcaagagaagttaaagtttgagatgaaaataagcaagatggaagttggtgaat 30055021  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 238 - 310
Target Start/End: Original strand, 30054738 - 30054810
Alignment:
Q  238 ggtataaaatccatgtccagaaatagttaaattgacaagtgtggtacttgatatacaaagaatttgtacatcc 310  Q
    ||||| ||||||||  ||| | ||||| |||||||||||||||  |||||||||||||||| ||| |||||||    
T  30054738 ggtatcaaatccatacccatatatagtcaaattgacaagtgtgtcacttgatatacaaagagtttctacatcc 30054810  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 506 - 556
Target Start/End: Complemental strand, 6889471 - 6889421
Alignment:
Q  506 agagaagttaaagtttgagatgaaaataagaaagatggaaattgttgaata 556  Q
    |||||||||||||| ||| ||||||||||| ||| |||||| |||||||||    
T  6889471 agagaagttaaagtgtgacatgaaaataagcaagttggaaaatgttgaata 6889421  T

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