View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_20 (Length: 528)
Name: NF1715_low_20
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 19 - 526
Target Start/End: Original strand, 42665506 - 42666014
Alignment:
| Q |
19 |
tttagtactgctatgatcgcatcttagaatttaagtcaaacgaaaattggtacagactaaatcacatttggta-aaccatattttttaaaggagtcatct |
117 |
Q |
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| T |
42665506 |
tttagtactgctatgatcgcatcttagaatttaggtcaaacgaaaattgatacaaactaaatcacatttagttgaaccatattttttaaaggagtcatct |
42665605 |
T |
|
| Q |
118 |
aacacaagtccaaccaaaccatgtattttaatctttgaatctaatgattttttatctcaaaattaatctaaaccatatctcacatgaatatccaaattac |
217 |
Q |
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| T |
42665606 |
aacacaagtccaaccaaaccatgtattttaatctttgaatctaatgattttttatctcaaaattaatctaaaccatatctcacatgaatatccaaattac |
42665705 |
T |
|
| Q |
218 |
ttattgctaaataaaaaattatttaccgacagcttttgccttttgataattcgatttactgacaatttatggtcgacacatgagcatttgccctcagcat |
317 |
Q |
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| T |
42665706 |
ttattgctaaataaaaaattatttaccgacagcttttgccttttgataattcgatttactgacaatttatggtcgacacatgagcatttgctctcagcat |
42665805 |
T |
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| Q |
318 |
ccaccctagaagagttttttagtgttacagatctgaactttcctacactttgggaagctagccacctttttccttgattggttaagtgatttgattgaac |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42665806 |
ccaccctagaagagttttttagtgttacagatctgaactttcctacactttgggaagctagccacctttttccttgattggttaagtgatttgattgaac |
42665905 |
T |
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| Q |
418 |
aatcttcatatcattccattccattttttccttttcatcttcccagccaagatagaggttgaaaatggttccctcatttttggaaatgtttttctccttc |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42665906 |
aatcttcatatcattccattccattttttccttttcatcttcccagccaagatagaggttgaaaatggttccctcatttttggaaatgtttttctccttt |
42666005 |
T |
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| Q |
518 |
atctcactc |
526 |
Q |
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| T |
42666006 |
atgtcactc |
42666014 |
T |
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