View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_213 (Length: 230)
Name: NF1715_low_213
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_213 |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 8 - 226
Target Start/End: Original strand, 20387236 - 20387455
Alignment:
| Q |
8 |
ttacctctccagggttcacagtcagcacatgaggtgacatgcttcctccagccgtttctccaacacatacacctgtcacaaatataagtttcattttcaa |
107 |
Q |
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| T |
20387236 |
ttacctctccagggttcacactcagcacatgaggtgacatgcttcctccagccgtttctccagcacattcacctgtcacaaatataagtttcattttcaa |
20387335 |
T |
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| Q |
108 |
gtatggtaaatagataaaattacatgcct--nnnnnnnccatttaacaatcttatttattttgaagaatccagnnnnnnntcgatgagaaccagtcaagc |
205 |
Q |
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| T |
20387336 |
gtatggtaaatagataaaattacatgtctacaaaaaaaccatttaacaatcttatttattttgaagaatcca-aaaaaaaacgatgagaaccagtcaagc |
20387434 |
T |
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| Q |
206 |
acaagatgtacctcaaatgga |
226 |
Q |
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||||||||||||||||||||| |
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| T |
20387435 |
acaagatgtacctcaaatgga |
20387455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 20366979 - 20367107
Alignment:
| Q |
8 |
ttacctctccagggttcacagtcagcacatgaggtgacatgcttcctccagccgtttctccaacacatacacctgtcacaaatataagtttcattttcaa |
107 |
Q |
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||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||| || |
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| T |
20366979 |
ttacctctccaggtttcacaatcagcacatgaggtgacatggttcctccagccgtttctccaacacatccacctgtcacaaatataaatttcatttttaa |
20367078 |
T |
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| Q |
108 |
gtatggtaaatagataaaattacatgcct |
136 |
Q |
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| T |
20367079 |
gcatggtaaattgataaaattacatgcct |
20367107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 20374304 - 20374427
Alignment:
| Q |
8 |
ttacctctccagggttcacagtcagcacatgaggtgacatgcttcctccagccgtttctccaacacatacacctgtcacaaatataagtttcattttcaa |
107 |
Q |
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| T |
20374304 |
ttacctctccaggtttcacaatcagcacatgaggtgacatgcttcctcgagccgtttctccaacacatccacctgtcacaaatataagtttcattttcaa |
20374403 |
T |
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| Q |
108 |
gtatggtaaatagataaaattacatgcct |
136 |
Q |
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| T |
20374404 |
-----gtaaatagataaaattacatgcct |
20374427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 20345647 - 20345735
Alignment:
| Q |
8 |
ttacctctccagggttcacagtcagcacatgaggtgacatgcttcctccagccgtttctccaacacatacacctgtcacaaatataagt |
96 |
Q |
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| T |
20345647 |
ttacctctctagggttcacaatcagcatataaggtgtcatgtttcctccatctgtttctgcaatacattcatctgcaacaaatataagt |
20345735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 20350201 - 20350298
Alignment:
| Q |
39 |
aggtgacatgcttcctccagccgtttctccaacacatacacctgtcacaaatataagtttcattttcaagtatggtaaatagataaaattacatgcct |
136 |
Q |
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| T |
20350201 |
aggtggcatgcttctttcagctgtttctgcaacaaatccacctaaaacaaatataagtttaattttaaagcataggaaatagataaactcacatgcct |
20350298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 18202222 - 18202339
Alignment:
| Q |
8 |
ttacctctccagggttcacagtcagcacatgaggtgacatgcttcctccagccgtttctccaacacatacacctgtcacaaatataagtttcattttcaa |
107 |
Q |
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||||||||| |||||||||| ||| |||| ||||| |||||| |||| | ||||||| ||||| || || |||| ||||||| |||||||| |||||| |
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| T |
18202222 |
ttacctctcgagggttcacaatcaatacataaggtgtaatgctttctccggtcgtttcttcaacaaatccatctgtaacaaataaaagtttcaatttcaa |
18202321 |
T |
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| Q |
108 |
gtatggtaaatagataaa |
125 |
Q |
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| T |
18202322 |
gcataagaaatagataaa |
18202339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 25047326 - 25047206
Alignment:
| Q |
13 |
tctccagggttcacagtcagcacatgaggtgacatgcttcctccagccgtttctccaacacatacacctgtcacaaatataagtttcattttcaagtatg |
112 |
Q |
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| T |
25047326 |
tctccatggttcacagttagaagatgagttgtcatgcttactccagctgtttccacaacatatccaccta-cattactataagtttcattttcaagcatg |
25047228 |
T |
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| Q |
113 |
gtaaatagataaaattacatgc |
134 |
Q |
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| T |
25047227 |
ggaaatagataaagtcacatgc |
25047206 |
T |
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