View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_214 (Length: 228)
Name: NF1715_low_214
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_214 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 456228 - 456017
Alignment:
| Q |
17 |
acttaattttatttttccatcatttgtcttatattattctagaacagaacatcgagatcctatgtcgtggtgtgtcgtgctcaaggtctagtgtagtgtt |
116 |
Q |
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| T |
456228 |
acttaattttatttttccatcatttgtcttatattattctagaacagaacatcgagatcctatgtcgtggtgtgtcgtgctcaaggtctagtgtagtgtt |
456129 |
T |
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| Q |
117 |
caggtgggataaatgacctatcattctctccttcttttggtcatcctccttctataattttcatggattaggagagtgagccaagtatcaatattctagg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
456128 |
taggtgggataaatgacctatcattctctccttcttttggtcctcctccttctataattttcatggaataggagagtgagccaagtataaatattctagg |
456029 |
T |
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| Q |
217 |
ttgagcaccttt |
228 |
Q |
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|||||||||| |
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| T |
456028 |
gcgagcaccttt |
456017 |
T |
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