View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_217 (Length: 226)
Name: NF1715_low_217
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_217 |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 3236034 - 3236255
Alignment:
| Q |
1 |
ttgatttttctcaaaatgaactatgatactaaacaacatggaaattttaacaccttgctctatttgatttctttcattccctaggtccttaatattgagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3236034 |
ttgatttttctcaaaatgaactatgatactaaacaacatggaaattttaacaccttgctctatttgatttctttcattccctaggtccttaatattgagg |
3236133 |
T |
|
| Q |
101 |
ctatgcatatggtttttactattaacattgccaaactaatgccaaaatccatttttccttgcataaatttcacattattgagccttaggttaatgttaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3236134 |
ctatgcatatggtttttactattaacattgccaaactaatgccaaaatccatttttccttgcataaatttcacattattgagccttaggttaatgttaag |
3236233 |
T |
|
| Q |
201 |
caattggtgtttcttctctctc |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
3236234 |
caattggtgtttcttctctctc |
3236255 |
T |
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