View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_219 (Length: 226)
Name: NF1715_low_219
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_219 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 6 - 226
Target Start/End: Original strand, 20865071 - 20865291
Alignment:
| Q |
6 |
attttgaacatcaggcatttgcaatcggttcacgctcactacctgcaaagacatatttggaacgcaaagttaacaacttcgcagcctcctcccggaaaga |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
20865071 |
attttgaacatcaggcatttgcaatcggttcacgctcactacctgcaaagacatatttggaacgcaaagttaacaacttcgcagcctcctcccgaaaaga |
20865170 |
T |
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| Q |
106 |
tctgatcaagaatgcactcattgcaattagggagtccttggtaggtgaaaagctcaggagcttcctatgcaccattgctgtcgttggagttggtgagcca |
205 |
Q |
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| T |
20865171 |
tctgatcaagaatgcactcattgcaattagggagtccttgctaggtgaaaagctcaggagcttcgtatgcaccattgctgtcgttggagttggtgagcca |
20865270 |
T |
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| Q |
206 |
ttcaacattttgggtcagaaa |
226 |
Q |
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||||||||||||||||||||| |
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| T |
20865271 |
ttcaacattttgggtcagaaa |
20865291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 6 - 218
Target Start/End: Original strand, 3401741 - 3401953
Alignment:
| Q |
6 |
attttgaacatcaggcatttgcaatcggttcacgctcactacctgcaaagacatatttggaacgcaaagttaacaacttcgcagcctcctcccggaaaga |
105 |
Q |
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|||||||| |||||||| ||||||| | ||||||||||| | |||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||| |
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| T |
3401741 |
attttgaatatcaggcagttgcaattgattcacgctcacaagctgcaaagacatatttggaacgcaaatttaacaacttcacagcctcctcccgggaaga |
3401840 |
T |
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| Q |
106 |
tctgatcaagaatgcactcattgcaattagggagtccttggtaggtgaaaagctcaggagcttcctatgcaccattgctgtcgttggagttggtgagcca |
205 |
Q |
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| T |
3401841 |
tctgatcaaggatgcactcattgcaactagggagtccttgcaaggtgaagagctcaggagctccgtatgcaccattgctgtggttggagttgatgagcca |
3401940 |
T |
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| Q |
206 |
ttcaacattttgg |
218 |
Q |
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| T |
3401941 |
ttccacattttgg |
3401953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 6 - 223
Target Start/End: Complemental strand, 7130868 - 7130651
Alignment:
| Q |
6 |
attttgaacatcaggcatttgcaatcggttcacgctcactacctgcaaagacatatttggaacgcaaagttaacaacttcgcagcctcctcccggaaaga |
105 |
Q |
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|||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||| ||| |||||||||||||| |||| |
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| T |
7130868 |
attttgaatatcaggcatttgcaatcggttcacgctcacaagctgcaaagacatatttggaacgcaaatttaacaatttcacagcctcctcccgggaaga |
7130769 |
T |
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| Q |
106 |
tctgatcaagaatgcactcattgcaattagggagtccttggtaggtgaaaagctcaggagcttcctatgcaccattgctgtcgttggagttggtgagcca |
205 |
Q |
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||||||||| |||| |||||||||| ||||||||||||| |||||||||||||||||||| | |||||||||||||||| |||||||||||||||||| |
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| T |
7130768 |
tctgatcaaagatgcgctcattgcaactagggagtccttgcaaggtgaaaagctcaggagctccgtatgcaccattgctgtggttggagttggtgagcca |
7130669 |
T |
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| Q |
206 |
ttcaacattttgggtcag |
223 |
Q |
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| T |
7130668 |
ttccacattttggatcag |
7130651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 6 - 223
Target Start/End: Complemental strand, 53043770 - 53043553
Alignment:
| Q |
6 |
attttgaacatcaggcatttgcaatcggttcacgctcactacctgcaaagacatatttggaacgcaaagttaacaacttcgcagcctcctcccggaaaga |
105 |
Q |
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|||||||| ||||||| |||||||||||||| || |||| | |||||| ||||||||||||| |||| ||||||||||| ||||||| || ||| |||| |
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| T |
53043770 |
attttgaatatcaggcttttgcaatcggttcgcgttcacaagctgcaatgacatatttggaatgcaagtttaacaacttcacagcctcatcgcgggaaga |
53043671 |
T |
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| Q |
106 |
tctgatcaagaatgcactcattgcaattagggagtccttggtaggtgaaaagctcaggagcttcctatgcaccattgctgtcgttggagttggtgagcca |
205 |
Q |
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||||||||| ||||||||||||||| |||||| |||||| ||| |||||||||||||||| | |||||||||||| ||| ||||| |||||||| ||| |
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| T |
53043670 |
tctgatcaaagatgcactcattgcaactagggaatccttgcaaggagaaaagctcaggagctccgtatgcaccattgttgtggttggggttggtgaacca |
53043571 |
T |
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| Q |
206 |
ttcaacattttgggtcag |
223 |
Q |
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||| ||||||||| |||| |
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| T |
53043570 |
ttccacattttggatcag |
53043553 |
T |
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