View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1715_low_227 (Length: 219)

Name: NF1715_low_227
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1715_low_227
NF1715_low_227
[»] chr5 (2 HSPs)
chr5 (22-106)||(5069080-5069164)
chr5 (156-199)||(5068926-5068969)
[»] chr3 (2 HSPs)
chr3 (22-86)||(6056612-6056676)
chr3 (22-71)||(43752095-43752144)
[»] chr6 (18 HSPs)
chr6 (22-84)||(5764182-5764244)
chr6 (22-84)||(5767717-5767779)
chr6 (22-84)||(5771252-5771314)
chr6 (22-84)||(5774787-5774849)
chr6 (22-84)||(5778322-5778384)
chr6 (22-84)||(5781857-5781919)
chr6 (22-84)||(5785392-5785454)
chr6 (22-84)||(5788927-5788989)
chr6 (22-84)||(5792462-5792524)
chr6 (22-84)||(5795997-5796059)
chr6 (22-84)||(5799532-5799594)
chr6 (22-84)||(5803067-5803129)
chr6 (22-84)||(5806602-5806664)
chr6 (22-84)||(5810137-5810199)
chr6 (22-84)||(5813672-5813734)
chr6 (22-84)||(5817207-5817269)
chr6 (56-106)||(10121224-10121274)
chr6 (22-91)||(10385412-10385480)
[»] chr2 (2 HSPs)
chr2 (21-65)||(12697429-12697473)
chr2 (22-105)||(11116407-11116491)
[»] chr1 (6 HSPs)
chr1 (22-70)||(26515689-26515737)
chr1 (18-71)||(3823787-3823840)
chr1 (23-92)||(11021297-11021366)
chr1 (23-92)||(14614888-14614957)
chr1 (22-59)||(34610578-34610615)
chr1 (22-70)||(27232310-27232358)
[»] chr4 (5 HSPs)
chr4 (22-83)||(4942985-4943045)
chr4 (22-93)||(22455723-22455794)
chr4 (22-85)||(37382289-37382352)
chr4 (22-60)||(50770702-50770740)
chr4 (23-92)||(3516868-3516937)
[»] chr7 (3 HSPs)
chr7 (18-88)||(10467262-10467333)
chr7 (22-79)||(18442013-18442071)
chr7 (22-71)||(27035165-27035214)


Alignment Details
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 22 - 106
Target Start/End: Complemental strand, 5069164 - 5069080
Alignment:
Q  22 cataattgacaataaaattgttgtctttcaaacttttacttacgaaaaattgatatttaatgacgaattttaaccgtagatacaa 106  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5069164 cataattgacaacaaaattgtagtctttcaaacttttacttacgaaaaattgatatttaatgacgaattttgaccgtagatacaa 5069080  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 156 - 199
Target Start/End: Complemental strand, 5068969 - 5068926
Alignment:
Q  156 atatcatgacaaatttatcaaagttattgtgaaccacatcttga 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  5068969 atatcatgacaaatttatcaaagttattgtgaaccacatcttga 5068926  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 6056676 - 6056612
Alignment:
Q  22 cataattgacaataaaattgttgtctttcaaacttttacttacgaaaaattgatatttaatgacg 86  Q
    ||||||| ||||||||||||||||||| ||||||||||| ||||||||| ||| ||||| |||||    
T  6056676 cataattaacaataaaattgttgtcttccaaacttttacctacgaaaaaatgacatttagtgacg 6056612  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 43752144 - 43752095
Alignment:
Q  22 cataattgacaataaaattgttgtctttcaaacttttacttacgaaaaat 71  Q
    ||||||||| | ||||||||||||||| ||||||||||| |||| |||||    
T  43752144 cataattgatagtaaaattgttgtcttccaaacttttacctacggaaaat 43752095  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 5764182 - 5764244
Alignment:
Q  22 cataattgacaataaaattgttgtctttcaaacttttacttacgaaaaattgatatttaatga 84  Q
    |||||||||||  ||||||||||||||||||| |||||| ||||||||| ||| |||||||||    
T  5764182 cataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacatttaatga 5764244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 5767717 - 5767779
Alignment:
Q  22 cataattgacaataaaattgttgtctttcaaacttttacttacgaaaaattgatatttaatga 84  Q
    |||||||||||  ||||||||||||||||||| |||||| ||||||||| ||| |||||||||    
T  5767717 cataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacatttaatga 5767779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 5771252 - 5771314
Alignment:
Q  22 cataattgacaataaaattgttgtctttcaaacttttacttacgaaaaattgatatttaatga 84  Q
    |||||||||||  ||||||||||||||||||| |||||| ||||||||| ||| |||||||||    
T  5771252 cataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacatttaatga 5771314  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 5774787 - 5774849
Alignment:
Q  22 cataattgacaataaaattgttgtctttcaaacttttacttacgaaaaattgatatttaatga 84  Q
    |||||||||||  ||||||||||||||||||| |||||| ||||||||| ||| |||||||||    
T  5774787 cataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacatttaatga 5774849  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 5778322 - 5778384
Alignment:
Q  22 cataattgacaataaaattgttgtctttcaaacttttacttacgaaaaattgatatttaatga 84  Q
    |||||||||||  ||||||||||||||||||| |||||| ||||||||| ||| |||||||||    
T  5778322 cataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacatttaatga 5778384  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 5781857 - 5781919
Alignment:
Q  22 cataattgacaataaaattgttgtctttcaaacttttacttacgaaaaattgatatttaatga 84  Q
    |||||||||||  ||||||||||||||||||| |||||| ||||||||| ||| |||||||||    
T  5781857 cataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacatttaatga 5781919  T

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Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 5785392 - 5785454
Alignment:
Q  22 cataattgacaataaaattgttgtctttcaaacttttacttacgaaaaattgatatttaatga 84  Q
    |||||||||||  ||||||||||||||||||| |||||| ||||||||| ||| |||||||||    
T  5785392 cataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacatttaatga 5785454  T

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Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 5788927 - 5788989
Alignment:
Q  22 cataattgacaataaaattgttgtctttcaaacttttacttacgaaaaattgatatttaatga 84  Q
    |||||||||||  ||||||||||||||||||| |||||| ||||||||| ||| |||||||||    
T  5788927 cataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacatttaatga 5788989  T

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Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 5792462 - 5792524
Alignment:
Q  22 cataattgacaataaaattgttgtctttcaaacttttacttacgaaaaattgatatttaatga 84  Q
    |||||||||||  ||||||||||||||||||| |||||| ||||||||| ||| |||||||||    
T  5792462 cataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacatttaatga 5792524  T

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Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 5795997 - 5796059
Alignment:
Q  22 cataattgacaataaaattgttgtctttcaaacttttacttacgaaaaattgatatttaatga 84  Q
    |||||||||||  ||||||||||||||||||| |||||| ||||||||| ||| |||||||||    
T  5795997 cataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacatttaatga 5796059  T

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Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 5799532 - 5799594
Alignment:
Q  22 cataattgacaataaaattgttgtctttcaaacttttacttacgaaaaattgatatttaatga 84  Q
    |||||||||||  ||||||||||||||||||| |||||| ||||||||| ||| |||||||||    
T  5799532 cataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacatttaatga 5799594  T

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Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 5803067 - 5803129
Alignment:
Q  22 cataattgacaataaaattgttgtctttcaaacttttacttacgaaaaattgatatttaatga 84  Q
    |||||||||||  ||||||||||||||||||| |||||| ||||||||| ||| |||||||||    
T  5803067 cataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacatttaatga 5803129  T

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Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 5806602 - 5806664
Alignment:
Q  22 cataattgacaataaaattgttgtctttcaaacttttacttacgaaaaattgatatttaatga 84  Q
    |||||||||||  ||||||||||||||||||| |||||| ||||||||| ||| |||||||||    
T  5806602 cataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacatttaatga 5806664  T

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Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 5810137 - 5810199
Alignment:
Q  22 cataattgacaataaaattgttgtctttcaaacttttacttacgaaaaattgatatttaatga 84  Q
    |||||||||||  ||||||||||||||||||| |||||| ||||||||| ||| |||||||||    
T  5810137 cataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacatttaatga 5810199  T

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Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 5813672 - 5813734
Alignment:
Q  22 cataattgacaataaaattgttgtctttcaaacttttacttacgaaaaattgatatttaatga 84  Q
    |||||||||||  ||||||||||||||||||| |||||| ||||||||| ||| |||||||||    
T  5813672 cataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacatttaatga 5813734  T

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Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 5817207 - 5817269
Alignment:
Q  22 cataattgacaataaaattgttgtctttcaaacttttacttacgaaaaattgatatttaatga 84  Q
    |||||||||||  ||||||||||||||||||| |||||| ||||||||| ||| |||||||||    
T  5817207 cataattgacagcaaaattgttgtctttcaaatttttacctacgaaaaaatgacatttaatga 5817269  T

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Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 10121224 - 10121274
Alignment:
Q  56 tttacttacgaaaaattgatatttaatgacgaattttaaccgtagatacaa 106  Q
    |||||||||||||||||||||||||  |||| |||||| |||||| |||||    
T  10121224 tttacttacgaaaaattgatatttagcgacggattttatccgtaggtacaa 10121274  T

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Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 10385412 - 10385480
Alignment:
Q  22 cataattgacaataaaattgttgtctttcaaacttttacttacgaaaaattgatatttaatgacgaattt 91  Q
    |||||||||||| ||||||| |||||| ||||||||||| ||| | ||| ||||||||| ||||| ||||    
T  10385412 cataattgacaacaaaattgctgtcttccaaacttttacctac-ataaaatgatatttattgacggattt 10385480  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 12697473 - 12697429
Alignment:
Q  21 acataattgacaataaaattgttgtctttcaaacttttacttacg 65  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||    
T  12697473 acataattgacagtaaaattgttgtctttcaaacttttacctacg 12697429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 11116491 - 11116407
Alignment:
Q  22 cataattgacaataaaattgttgtctttcaaacttttacttacg-aaaaattgatatttaatgacgaattttaaccgtagataca 105  Q
    ||||||| |||  |||||||||||||| ||||||||||  |||| ||||| ||| ||||| ||||| |||||| |||||| ||||    
T  11116491 cataattcacagcaaaattgttgtcttccaaacttttagctacgaaaaaaatgacatttagtgacggattttatccgtaggtaca 11116407  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 26515737 - 26515689
Alignment:
Q  22 cataattgacaataaaattgttgtctttcaaacttttacttacgaaaaa 70  Q
    |||||||||||| |||||||||||||||||||||| ||| |||||||||    
T  26515737 cataattgacaacaaaattgttgtctttcaaacttctacctacgaaaaa 26515689  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 3823840 - 3823787
Alignment:
Q  18 aatacataattgacaataaaattgttgtctttcaaacttttacttacgaaaaat 71  Q
    |||||||| ||||||||||||||||| | ||||| |||||||| ||||||||||    
T  3823840 aatacatagttgacaataaaattgttatatttcagacttttacctacgaaaaat 3823787  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 11021297 - 11021366
Alignment:
Q  23 ataattgacaataaaattgttgtctttcaaacttttacttacgaaaaattgatatttaatgacgaatttt 92  Q
    |||||||||| |||||||  || |||| | || ||||| || |||||||||||||||||||||| |||||    
T  11021297 ataattgacagtaaaatttatgccttttagacctttacctatgaaaaattgatatttaatgacggatttt 11021366  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 14614957 - 14614888
Alignment:
Q  23 ataattgacaataaaattgttgtctttcaaacttttacttacgaaaaattgatatttaatgacgaatttt 92  Q
    ||||||||| | |||||||||||||| || |||||||| ||| ||||| ||| ||||| |||| ||||||    
T  14614957 ataattgacgacaaaattgttgtcttccatacttttacctacaaaaaaatgacatttattgacaaatttt 14614888  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 34610578 - 34610615
Alignment:
Q  22 cataattgacaataaaattgttgtctttcaaactttta 59  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  34610578 cataattgacaataaaatttttgtcttccaaactttta 34610615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 27232310 - 27232358
Alignment:
Q  22 cataattgacaataaaattgttgtctttcaaacttttacttacgaaaaa 70  Q
    |||||||||||||||| |||||||||||||  ||||||| |||| ||||    
T  27232310 cataattgacaataaagttgttgtctttcagtcttttacctacggaaaa 27232358  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 4943045 - 4942985
Alignment:
Q  22 cataattgacaataaaattgttgtctttcaaacttttacttacgaaaaattgatatttaatg 83  Q
    |||||||||||  |||||| || |||||||||||||||||||| ||||| ||||||||||||    
T  4943045 cataattgacagcaaaattattatctttcaaacttttacttac-aaaaaatgatatttaatg 4942985  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 22455723 - 22455794
Alignment:
Q  22 cataattgacaataaaattgttgtctttcaaacttttacttacgaaaaattgatatttaatgacgaatttta 93  Q
    ||||||||||||||||||| |||| ||| | | |||||  ||| |||||||||||||| |||||| ||||||    
T  22455723 cataattgacaataaaattattgtattttagatttttatctacaaaaaattgatatttgatgacggatttta 22455794  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 37382352 - 37382289
Alignment:
Q  22 cataattgacaataaaattgttgtctttcaaacttttacttacgaaaaattgatatttaatgac 85  Q
    ||||||||||   |||||||||||||| |||| ||||||  |||||||| ||||||||||||||    
T  37382352 cataattgacttcaaaattgttgtcttccaaatttttacgaacgaaaaaatgatatttaatgac 37382289  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 50770740 - 50770702
Alignment:
Q  22 cataattgacaataaaattgttgtctttcaaacttttac 60  Q
    |||||||||||| ||||||| ||||||||||||||||||    
T  50770740 cataattgacaacaaaattgatgtctttcaaacttttac 50770702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 3516868 - 3516937
Alignment:
Q  23 ataattgacaataaaattgttgtctttcaaacttttacttacgaaaaattgatatttaatgacgaatttt 92  Q
    ||||||||||||||||| ||||  ||  | |||||||| ||||||||| ||| ||||| |||||||||||    
T  3516868 ataattgacaataaaatagttgaattctagacttttacctacgaaaaaatgacatttagtgacgaatttt 3516937  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 10467262 - 10467333
Alignment:
Q  18 aatacataattgacaataaaattgttgtctttcaaacttttacttacg-aaaaattgatatttaatgacgaa 88  Q
    ||||||||||| |||| ||||||||||||||  ||||||||||  ||| ||||| ||| |||||||||||||    
T  10467262 aatacataatttacaacaaaattgttgtcttataaacttttaccaacgaaaaaaatgacatttaatgacgaa 10467333  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 18442071 - 18442013
Alignment:
Q  22 cataattgacaataaaattgttgtctttcaaacttttacttacgaaaaat-tgatattt 79  Q
    ||||||| |||| |||||||||||||||||||||| ||| || ||||||| ||||||||    
T  18442071 cataatttacaacaaaattgttgtctttcaaacttgtacctatgaaaaatgtgatattt 18442013  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 27035214 - 27035165
Alignment:
Q  22 cataattgacaataaaattgttgtctttcaaacttttacttacgaaaaat 71  Q
    |||||||||||| |||| ||||||||| ||||| ||||| ||||||||||    
T  27035214 cataattgacaacaaaaatgttgtcttccaaacatttacctacgaaaaat 27035165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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