View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_235 (Length: 211)
Name: NF1715_low_235
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_235 |
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Alignment Details
Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 110 - 193
Target Start/End: Complemental strand, 31827763 - 31827681
Alignment:
| Q |
110 |
taagcacttctcaagaaaagaattcactcaaacaaataacttgtagttctacacaataggggtcagtaaagtgaggcttcagct |
193 |
Q |
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| T |
31827763 |
taagcacttctcaagaaaagaattcactcaaacaaataacttgtagttctacacaata-gggtcagtaaagtgaggcttcagct |
31827681 |
T |
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Target: chr1; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 31827848 - 31827799
Alignment:
| Q |
25 |
tggttattatagagaacacagaacacagaatggtgtctgattctgaacag |
74 |
Q |
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| T |
31827848 |
tggttattatagagaacacagaacacagaatggtgtctgattctgaacag |
31827799 |
T |
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