View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_238 (Length: 205)
Name: NF1715_low_238
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_238 |
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Alignment Details
Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 16461313 - 16461487
Alignment:
| Q |
1 |
aagagtaaatccatgttgaacattcaataatgtcaaatgttatcagaatgtagacttaatgtgcagcaataattttcttccatattatg-aacaatttgc |
99 |
Q |
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| T |
16461313 |
aagagtaaatcgatgttgaacattcaataatgtcaaatgttatcagaatgtagacctaatgttcagcaacaattttcttccatattatgaaacaatttgc |
16461412 |
T |
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| Q |
100 |
ttgaatattattgaattttactatggatatttctgttctgcatcaagggatatggccagagtcaccaagtttcaaagatgagggt |
184 |
Q |
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| T |
16461413 |
----------ttgaattttactatggatatttctgttctgcatcaagggatatggccagagtcaccaagtttcaaagatgagggt |
16461487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 81 - 184
Target Start/End: Original strand, 16491328 - 16491431
Alignment:
| Q |
81 |
catattatgaacaatttgcttgaatattattgaattttactatggatatttctgttctgcatcaagggatatggccagagtcaccaagtttcaaagatga |
180 |
Q |
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|||||| ||||||||||| |||||||||||| |||| || || ||| ||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
16491328 |
catattgtgaacaatttgtttgaatattattcaattatataatacctatctctgttctgcaccaagggatatggccagagtcaccaagtttcacagatga |
16491427 |
T |
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| Q |
181 |
gggt |
184 |
Q |
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|||| |
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| T |
16491428 |
gggt |
16491431 |
T |
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