View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_25 (Length: 508)
Name: NF1715_low_25
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 5e-85; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 204 - 424
Target Start/End: Original strand, 13871941 - 13872165
Alignment:
| Q |
204 |
tttttatatcgtgtctaatcaggcatcaaatattgctaatttattaacattaaatatccatcaataacaaacttgaaa----tatatatatttgattaaa |
299 |
Q |
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| T |
13871941 |
tttttataccgtgcttaatcaagcatcaaatattgctgacttattgatatgaaaaatccattaataacaaacttgaaagaaatatatatatttgattaaa |
13872040 |
T |
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| Q |
300 |
ggaagagaatcgcgcacccatctccatcaaacctgcaaaaaatagaaatggaaagcttgatatgagtccagataaacttaaataccaaaccttcctaaaa |
399 |
Q |
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| T |
13872041 |
ggaagagaatcgcgcacccatctccatcaaacctgcaaaaaatagaaatggaaagcttgatttgagtccagataaacttaaataccaaaccttcctaaaa |
13872140 |
T |
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| Q |
400 |
gtaactatatgtaaatgaaaatcaa |
424 |
Q |
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||||||||||||||||||||||||| |
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| T |
13872141 |
gtaactatatgtaaatgaaaatcaa |
13872165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 13852910 - 13853046
Alignment:
| Q |
18 |
ttcataaatttacagcctccaaagtattcttcttgtttaaggcgagaagttctcacgaagtgggaaacatatgtagcttttccatctttgatacgcaaac |
117 |
Q |
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| T |
13852910 |
ttcataaatttacagcctccaaagtattcttcttgtttaaggcgagaagttctcacaaaatgggaaacatatgtagcttttccatctttgatacgcaaac |
13853009 |
T |
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| Q |
118 |
catgaatcattctgcaattcattgataccaaaattgt |
154 |
Q |
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| T |
13853010 |
catgaatcattctgcaattcattgataccaaaattgt |
13853046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 13871786 - 13871922
Alignment:
| Q |
18 |
ttcataaatttacagcctccaaagtattcttcttgtttaaggcgagaagttctcacgaagtgggaaacatatgtagcttttccatctttgatacgcaaac |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||| |
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| T |
13871786 |
ttcataaatttacagcctccaaagtattcttcttgtttaaggcgagaagttctcacgaaatgggaaacatatgttgcttttccatctttgatgcgcaaac |
13871885 |
T |
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| Q |
118 |
catgaatcattctgcaattcattgataccaaaattgt |
154 |
Q |
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| T |
13871886 |
catgaatcattctgcaattcattgataccaaaattgt |
13871922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 297 - 424
Target Start/End: Original strand, 13853140 - 13853267
Alignment:
| Q |
297 |
aaaggaagagaatcgcgcacccatctccatcaaacctgcaaaaaatagaaatggaaagcttgatatgagtccagataaacttaaataccaaaccttccta |
396 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13853140 |
aaaggaagagaatcacgcacccatctccatcaaacctgcaaaaaatagaaatggaaagcttgatatgagtccagataaacttaaataccaaaccttccta |
13853239 |
T |
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| Q |
397 |
aaagtaactatatgtaaatgaaaatcaa |
424 |
Q |
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| T |
13853240 |
aaagtaactatatgtaaatgaaaatcaa |
13853267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 13894262 - 13894411
Alignment:
| Q |
18 |
ttcataaatttacagcctccaaagtattcttcttgtttaaggcgagaagttctcacgaagtgggaaacatatgtagcttttccatctttgatacgcaaac |
117 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||| |
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| T |
13894262 |
ttcataaatttagaccctccaaagtattcttcttgtttaaggcgagaagttctcacaaaacgggaaacatatgtagcttttccatctttgatgcgcaaac |
13894361 |
T |
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| Q |
118 |
catgaatcattctgcaattcattgataccaaaattgtcaccttctgttaa |
167 |
Q |
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|||||||||||||||||||||||||||| |||||| | |||||||||||| |
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| T |
13894362 |
catgaatcattctgcaattcattgatactaaaattataaccttctgttaa |
13894411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 18 - 142
Target Start/End: Original strand, 13901540 - 13901664
Alignment:
| Q |
18 |
ttcataaatttacagcctccaaagtattcttcttgtttaaggcgagaagttctcacgaagtgggaaacatatgtagcttttccatctttgatacgcaaac |
117 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
13901540 |
ttcataaatttagagcctccaaagtattcttcttgtttaagacgagaagttttcacgaagcgggaaacatatgtagcttttccatctttgatacgcaaac |
13901639 |
T |
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| Q |
118 |
catgaatcattctgcaattcattga |
142 |
Q |
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||||||||||||||||||| ||||| |
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| T |
13901640 |
catgaatcattctgcaattaattga |
13901664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 204 - 281
Target Start/End: Original strand, 13853065 - 13853142
Alignment:
| Q |
204 |
tttttatatcgtgtctaatcaggcatcaaatattgctaatttattaacattaaatatccatcaataacaaacttgaaa |
281 |
Q |
| |
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|||||||| |||| |||||| ||||||||||||||||| ||||| | || ||| |||||| |||||||||||||||| |
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| T |
13853065 |
tttttataccgtgcttaatcaagcatcaaatattgctaacttattgatatgaaaaatccattaataacaaacttgaaa |
13853142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 349
Target Start/End: Original strand, 13894547 - 13894603
Alignment:
| Q |
296 |
taaaggaagagaatcgcgca----cccatctccatcaaacctgcaaaaaatagaaatg |
349 |
Q |
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| T |
13894547 |
taaaggaagagaatcgcgcacgcacccatctccatcaaacctgc-aaaaatagaaatg |
13894603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 340
Target Start/End: Original strand, 13901733 - 13901761
Alignment:
| Q |
312 |
cgcacccatctccatcaaacctgcaaaaa |
340 |
Q |
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| T |
13901733 |
cgcacccatctccatcaaacctgcaaaaa |
13901761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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