View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_28 (Length: 502)
Name: NF1715_low_28
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_28 |
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| [»] scaffold0685 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 456; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 18 - 489
Target Start/End: Original strand, 29549316 - 29549787
Alignment:
| Q |
18 |
ttaatgttgtgaagtcatgtgcaaaatcaccatctgtacaacgagttgttttaacttcttctattgccacagctttatatactggaaaacctcgaacccc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29549316 |
ttaatgttgtgaagtcatgtgcaaaatcaccatctgtacaacgagttgttttaacttcttctattgccacagctttatatactggaaaacctcgaacccc |
29549415 |
T |
|
| Q |
118 |
ggaagttgaagttgatgaaacgtggttttcgaatcaagatttcttatggcaaaataaggtactatatatatgtaatgtgccccttttccattcactagac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29549416 |
ggaagttgaagttgatgaaacgtggttttcgaatcaagatttcttatggcaaaataaggtactatatatatgtaatgtgccccttttccattcactagac |
29549515 |
T |
|
| Q |
218 |
aattattgatcaaaaattaatgtggattttagttgttataataatgctcatttaaagttacatatttcagatgtggtatcaatttgcaaagacttcagct |
317 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29549516 |
aattattgatcaaaaattaatgttgattttagttgttataataatgctaatgtaaagttacatatttcagatgtggtatcaatttgcaaagacttcagct |
29549615 |
T |
|
| Q |
318 |
gaggaagctgcaacgaaatttctaacagaaaacaacatcgaccacgttgttatgaatccagcagtggcattagggcctctcttacaatcagagcttaacg |
417 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29549616 |
gaggaagctgcaacaaaatttctaacagaaaacaacatcgaccacgttgttatgaatccagcagtggcattagggcctctcttacaatcagagcttaacg |
29549715 |
T |
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| Q |
418 |
aaagttccactttaattcttaacttaataaatggtactaacttctatttgctactgaaattttttccaattt |
489 |
Q |
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| T |
29549716 |
aaagttccactttaattcttaacttaataaatggtactaacttctatttgctactgaaattttttccaattt |
29549787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 279 - 453
Target Start/End: Original strand, 29556116 - 29556290
Alignment:
| Q |
279 |
atatttcagatgtggtatcaatttgcaaagacttcagctgaggaagctgcaacgaaatttctaacagaaaacaacatcgaccacgttgttatgaatccag |
378 |
Q |
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||||||||||||||||| |||||||||||| ||||||||||||||| ||||| |||||||||||||||||| |||| ||| |||||||||||||||||| |
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| T |
29556116 |
atatttcagatgtggtaccaatttgcaaaggtttcagctgaggaagcagcaacaaaatttctaacagaaaacgacattgactacgttgttatgaatccag |
29556215 |
T |
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| Q |
379 |
cagtggcattagggcctctcttacaatcagagcttaacgaaagttccactttaattcttaacttaataaatggta |
453 |
Q |
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| T |
29556216 |
cggtgacgatagggcctctcttacaaccagagcttaacggaagttcctccttaatttttgacttaataaagggta |
29556290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 29555773 - 29555872
Alignment:
| Q |
18 |
ttaatgttgtgaagtcatgtgcaaaatcaccatctgtacaacgagttgttttaacttcttctattgccacagctttatatactggaaaacctcgaacccc |
117 |
Q |
| |
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|||||||| ||| ||||||||||||||||||||||| |||| |||||||| |||||||| ||||| |||||||| |||| |||| |||||||||||| |
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| T |
29555773 |
ttaatgttttgagatcatgtgcaaaatcaccatctgtgaaacgggttgtttttacttcttccattgctacagctttgtataacggaacacctcgaacccc |
29555872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 29559246 - 29559413
Alignment:
| Q |
18 |
ttaatgttgtgaagtcatgtgcaaaatcaccatctgtacaacgagttgttttaacttcttctattgccacagctttatatactggaaaacctcgaacccc |
117 |
Q |
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|||||||| | ||||||||||| ||||| |||||||| |||| |||||| |||||||| ||||| | | | |||||| ||||| || |||| || |
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| T |
29559246 |
ttaatgttcttaagtcatgtgcgaaatcgccatctgtcaaacgcgttgttataacttct---attgcatctgttgtatataatggaaggcccagaactcc |
29559342 |
T |
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| Q |
118 |
ggaagttgaagttgatgaaacgtggttttcgaatcaagatttcttatggcaaaataaggtactatatatat |
188 |
Q |
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||||||| ||||||||| || |||||||| |||| |||||| |||||| || | |||||||||||||||| |
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| T |
29559343 |
tgaagttgtagttgatgagacatggttttcaaatccagatttattatgggaacaaaaggtactatatatat |
29559413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0685 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold0685
Description:
Target: scaffold0685; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 279 - 453
Target Start/End: Original strand, 5215 - 5389
Alignment:
| Q |
279 |
atatttcagatgtggtatcaatttgcaaagacttcagctgaggaagctgcaacgaaatttctaacagaaaacaacatcgaccacgttgttatgaatccag |
378 |
Q |
| |
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||||||||||||||||| |||||||||||| ||||||||||||||| ||||| |||||||||||||||||| |||| ||| |||||||||||||||||| |
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| T |
5215 |
atatttcagatgtggtaccaatttgcaaaggtttcagctgaggaagcagcaacaaaatttctaacagaaaacgacattgactacgttgttatgaatccag |
5314 |
T |
|
| Q |
379 |
cagtggcattagggcctctcttacaatcagagcttaacgaaagttccactttaattcttaacttaataaatggta |
453 |
Q |
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| ||| | ||||||||||||||||| |||||||||||| ||||||| | |||||| || |||||||||| |||| |
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| T |
5315 |
cggtgacgatagggcctctcttacaaccagagcttaacggaagttcctccttaatttttgacttaataaagggta |
5389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 26101912 - 26101974
Alignment:
| Q |
18 |
ttaatgttgtgaagtcatgtgcaaaatcaccatctgtacaacgagttgttttaacttcttcta |
80 |
Q |
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|||||||| | || ||||||||||| ||| ||||||| |||||||||| ||||||||||||| |
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| T |
26101912 |
ttaatgttcttaaatcatgtgcaaagtcaacatctgtgaaacgagttgtcttaacttcttcta |
26101974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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