View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_29 (Length: 501)
Name: NF1715_low_29
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 9 - 484
Target Start/End: Original strand, 7166240 - 7166716
Alignment:
| Q |
9 |
agcacagaagagaaaaagaacaggnnnnnnnnctcctagcccaaaccatataagtatatcttctttattttcgaatgagaataaaatttattatgtgaac |
108 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7166240 |
agcacagaagagaaaaagaacaggaaaaaaaactcctagcccaaaccatataagtatatcttctttattttcgaatgagaataaaatttattatgtgaac |
7166339 |
T |
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| Q |
109 |
cttgtttttagtcaatggtcagccttcataaagtcttaatgtacctttatataattttggtcaaaaaattgtttatttagaatattaatattaatatttt |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7166340 |
cttgtttttagtcaatggtcagccttcataaagtcttaatgtacctttatataattttggtcaaaaaattgtttattcctaatattaatattaatatttt |
7166439 |
T |
|
| Q |
209 |
tatgaaaggaaaataattt-attcnnnnnnnnnnnnncatatattaattaaatggttttaatagtcattttaccagtattgctaagggggtctgtttggg |
307 |
Q |
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||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7166440 |
tatgaaaggaaaataattttattcaaaaaaagaaaaacatatattaattaaatggttttaatagtcattttaccagtattgctaagggggtctgtttggg |
7166539 |
T |
|
| Q |
308 |
agtaaggagagggagagctttggatgattacagtgtatgnnnnnnntaaaatagtcagcccatttgagaggtcatctgcctcccctgataaccatataat |
407 |
Q |
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| T |
7166540 |
agtaaggagagggagagctttggatgattacagtgtatgaaaaaaataaaatagtcagcccatttgagaggtcatctgcctcccctgataaccatataat |
7166639 |
T |
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| Q |
408 |
ctaacaatcacattaggttacgttagacacactaaaaatcaaggaacactccatcagtaaggtcggcatctatcaaa |
484 |
Q |
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| T |
7166640 |
ctaagtatcacattaggttacgttagacacactaaaaatcaaggaacactccatcagtaaggtcggcatctatcaaa |
7166716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 136 - 346
Target Start/End: Original strand, 7191333 - 7191541
Alignment:
| Q |
136 |
ataaagtcttaatgtacctttatataattttggtcaaaaaattgtttatttagaatattaatattaatatttttatgaaaggaaaataatttattcnnnn |
235 |
Q |
| |
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||||||| ||||||| ||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||| | |
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| T |
7191333 |
ataaagttttaatgt--ctttatataattttggtcaaaaaattggttatacaaaatattaatattaatatttttatgaaaggaaaataattttattaaaa |
7191430 |
T |
|
| Q |
236 |
nnnnnnnnncatatattaattaaatggttttaatagtcattttaccagtattgctaagggggtctgtttgggagtaaggagagggagagctttggatgat |
335 |
Q |
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| T |
7191431 |
aaaggaaaaaaaatattaattaagtgactttaatagtcaatttttcagtgttgctaagggggtctgtttgggagtagggagagggagagctttggatgat |
7191530 |
T |
|
| Q |
336 |
tacagtgtatg |
346 |
Q |
| |
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||||||||||| |
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| T |
7191531 |
tacagtgtatg |
7191541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 248 - 336
Target Start/End: Original strand, 7184541 - 7184627
Alignment:
| Q |
248 |
atattaattaaatggttttaatagtcattttaccagtattgctaagggggtctgtttgggagtaaggagagggagagctttggatgatt |
336 |
Q |
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||||||||||| ||| ||||||||||||||||||| | ||||||| |||||| |||||||||| |||||||| ||||||||||||||| |
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| T |
7184541 |
atattaattaagtggctttaatagtcattttaccaatgttgctaa--gggtctatttgggagtatggagagggggagctttggatgatt |
7184627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 158 - 346
Target Start/End: Original strand, 7175881 - 7176065
Alignment:
| Q |
158 |
tataattttggtcaaaaaattgtttatttagaatattaatattaatatttttatgaaaggaaaataatttattcnnnnnnnnnnnnncatatattaatta |
257 |
Q |
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||||||||||||||||| || ||||| | |||||||||||||||||||||||||||||||||||||| || | ||||||| || |
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| T |
7175881 |
tataattttggtcaaaattttttttatacaaaatattaatattaatatttttatgaaaggaaaataatt--ttattaaaaaaaataaaaaatattaaata |
7175978 |
T |
|
| Q |
258 |
aatggttttaatagtcattttaccagtattgctaagggggtctgtttgggagtaaggagagggagagctttggatgattacagtgtatg |
346 |
Q |
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| ||| ||||||||||||||||||| | || |||| ||||||||||||||||| ||||||||| |||||||||| |||| ||||||| |
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| T |
7175979 |
agtggctttaatagtcattttaccaatgtttctaa--gggtctgtttgggagtagggagagggatagctttggatcattatcgtgtatg |
7176065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 78
Target Start/End: Original strand, 7191154 - 7191191
Alignment:
| Q |
41 |
ctcctagcccaaaccatataagtatatcttctttattt |
78 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
7191154 |
ctcctagcccaaaccatataagtatatcttctttattt |
7191191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 227
Target Start/End: Original strand, 7184440 - 7184521
Alignment:
| Q |
139 |
aagtcttaatgtacctttatataattttggtcaaaaa-attgtttatttagaatattaatattaatatttttatgaaaggaaaataattt |
227 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||| |||||||| || ||||||||||||||| ||||||||||||||||| |
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| T |
7184440 |
aagtcttaatgt--ctttatataattttggtcaaaaagtttgtttatacag------aatattaatatttttgtgaaaggaaaataattt |
7184521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 427
Target Start/End: Original strand, 41156978 - 41157045
Alignment:
| Q |
359 |
tagtcagcccatttgagaggtcatctgcctcccctgataaccatataatctaacaatcacattaggtta |
427 |
Q |
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| T |
41156978 |
tagtcagcccatttgagaggtc-cctgcctccactgatgagtatataacctaactatcccattaggtta |
41157045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 427
Target Start/End: Complemental strand, 27752112 - 27752045
Alignment:
| Q |
359 |
tagtcagcccatttgagaggtcatctgcctcccctgataaccatataatctaacaatcacattaggtta |
427 |
Q |
| |
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||||| |||||||||||||||| ||||||||| ||||| | |||||| ||||| ||| |||||||||| |
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| T |
27752112 |
tagtcggcccatttgagaggtc-tctgcctccactgatgagtatataagctaactatctcattaggtta |
27752045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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