View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_32 (Length: 497)
Name: NF1715_low_32
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 17 - 486
Target Start/End: Complemental strand, 48606334 - 48605865
Alignment:
| Q |
17 |
accccttttgtccagattccccttttaccctctctttcctcttaattttcccaatttgttcaaaaatttcaccttttccaaattgggtttgttctgcatg |
116 |
Q |
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| T |
48606334 |
accccttttgtccagattccccttttaccctctctttcctcttaattttcccaatttgttcaaaaatttcaccttttccaaattgggtttgttctgcatg |
48606235 |
T |
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| Q |
117 |
atgaattattgctaatcaaatattaaaaattannnnnnnggtcaatgaggaattgtttataagttatatagattttcaattgcttgttgatgaagagaag |
216 |
Q |
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| T |
48606234 |
atgaattattgctaatcaaatattaaaaattatttttttggtcaatgaggaattgtttataagttatatagattttcaattgcttggtgatgaagagaag |
48606135 |
T |
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| Q |
217 |
cttttgtttttaaaagtgttgcatagtnnnnnnnnnnnnnnnttcttgttttgttcactgttttagtggtggtaacagttatgggtggtgagggtagagt |
316 |
Q |
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| T |
48606134 |
cttttgtttttaaaagtgttgcatagtaaaaaatataaaaaattcttgttttgttcactgttttagtggtggtaacagttatgggtggtgagggtagagt |
48606035 |
T |
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| Q |
317 |
tgaagttgtgagtggcaaagggtgttcgaggctgttttcgtcttcaatcagaaatcttcaaccattggaccaaatgtctcctgtttcatcctctccgcaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48606034 |
tgaagttgtgagtggcaaagggtgttcgaggctgttttcgtcttcaatcagaaatcttcaaccattggaccaaatgtctcctgtttcatcctctccgcaa |
48605935 |
T |
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| Q |
417 |
ttgccatcaaatgctccttttgctggtcttgttatatgtgttactggtttatctaaaggtgtggattcat |
486 |
Q |
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| T |
48605934 |
ttgccatcaaatgctccttttgctggtcttgttatatgtgttactggtttatctaaaggtgtggattcat |
48605865 |
T |
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