View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1715_low_34 (Length: 492)

Name: NF1715_low_34
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1715_low_34
NF1715_low_34
[»] chr6 (2 HSPs)
chr6 (63-492)||(3235611-3236045)
chr6 (30-70)||(3235427-3235467)


Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 63 - 492
Target Start/End: Original strand, 3235611 - 3236045
Alignment:
Q  63 aaaacacattcttgatgtgttagtaccttatgtggagaagaaacaaaatacaaaaataatttttctttcaatatctttgagagtttggtttaatggtaaa 162  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3235611 aaaatacattcttgatgtgttagtaccttatgtggagaagaaacaaaatacaaaattaatttttctttcaatatctttgagagtttggtttaatggtaaa 3235710  T
Q  163 aaagtaagtcttgaataaaaggtcttctctactttataatgaggcaccatcgtctaaccttgaaatttttccatcaacaagtaaaaatttcaatatatat 262  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  3235711 aaagtaagtcttgaacaaaaggtcttctctactttataatgaggcaccatcgtctaaccttgaaatttttccatcaaaaagtaaaaatttcaatacatat 3235810  T
Q  263 a-------tttnnnnnnnnnnnnnnnttgaatttattgaatcaacaacatatgtcgaaataatttccggaaaagnnnnnnnnnnncatatgttgatgaac 355  Q
    |       |||               |||||||||||||||||||||||||||||||||||||||||||||||            | |||||||||||||    
T  3235811 atatattttttttttaaaaaaactaattgaatttattgaatcaacaacatatgtcgaaataatttccggaaaa--caaaaaaaaacttatgttgatgaac 3235908  T
Q  356 ccaattcttgacttcaagaattttcttcaaaacttcactttgaaatctgaatcacacttatacaagcaattctatgtgtcccttctcaatgtttttctcc 455  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3235909 ccaattcttgacttcaagaattttcttcaaaacttcactttgaaatctgaatcacacttatacaagcaattctatgtgtcccttctcaatgtttttctcc 3236008  T
Q  456 caccttgaccttgctagcaacaaatttgatttttctc 492  Q
    ||||||||||||| |||||||||||||||||||||||    
T  3236009 caccttgaccttgttagcaacaaatttgatttttctc 3236045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 3235427 - 3235467
Alignment:
Q  30 ttgggcaaccaaatcgtcatactatgaagttgcaaaacaca 70  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  3235427 ttgggcaaccaaatcgtcatactatgaagttgcaaaacaca 3235467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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