View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1715_low_38 (Length: 479)

Name: NF1715_low_38
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1715_low_38
NF1715_low_38
[»] chr4 (3 HSPs)
chr4 (1-224)||(31524673-31524896)
chr4 (321-469)||(31524430-31524578)
chr4 (30-66)||(26627855-26627891)
[»] chr3 (2 HSPs)
chr3 (1-217)||(33366605-33366821)
chr3 (321-469)||(33366922-33367070)
[»] chr1 (3 HSPs)
chr1 (1-217)||(49194637-49194853)
chr1 (321-469)||(49194388-49194536)
chr1 (29-66)||(39334573-39334610)
[»] chr8 (2 HSPs)
chr8 (1-151)||(41437012-41437162)
chr8 (1-151)||(42934027-42934177)
[»] chr2 (1 HSPs)
chr2 (29-66)||(28503430-28503467)


Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 31524896 - 31524673
Alignment:
Q  1 ttggggaagaagactacctctgtggtgttgattgatgagtgtggaaacaagtggaattgtatcactgtgttcgggaaacggccacatcgccacatcaaaa 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31524896 ttggggaagaagactgcctctgtggtgttgattgatgagtgtggaaacaagtggaattgtatcactgtgttcgggaaacggccacatcgccacatcaaaa 31524797  T
Q  101 ttggagggggttggaagcatatggttgaagcacgcaacataccaataggtgtaagtaacgaagatcggtgctccaagggttgggaacaatgacacactct 200  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  31524796 ttggagggggttggaagcgtatggttgaagcacgcaacataccaataggtgtaagtaacgaagatcggtgctccaagggttgggaacaatgatacaatct 31524697  T
Q  201 acctagaagtcagacgctcgtctg 224  Q
    ||||||||||||||||| ||||||    
T  31524696 acctagaagtcagacgcccgtctg 31524673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 321 - 469
Target Start/End: Complemental strand, 31524578 - 31524430
Alignment:
Q  321 aagtggaacaattgtagaagttgttgttttgtaagagttgttgacatcatttgaattgaaagaagcattttggcctttggcatttcgaattaagatgcgt 420  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31524578 aagtggaacaattgtagaagttgttgttttgtaagagttgttgatatcatttgaattgaaagaagcattttggcctttggcattttgaattaagatgcgt 31524479  T
Q  421 tgtttggttctgttcttgcaatacaaatgattaaacatgtgtgcctatg 469  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31524478 cgtttggttctgttcttgcaatacaaatgattaaacatgtgtgcctatg 31524430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 26627891 - 26627855
Alignment:
Q  30 gattgatgagtgtggaaacaagtggaattgtatcact 66  Q
    ||||||||| |||||||||||||||||||||||||||    
T  26627891 gattgatgaatgtggaaacaagtggaattgtatcact 26627855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 33366605 - 33366821
Alignment:
Q  1 ttggggaagaagactacctctgtggtgttgattgatgagtgtggaaacaagtggaattgtatcactgtgttcgggaaacggccacatcgccacatcaaaa 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33366605 ttggggaagaagactgcctctgtggtgttgattgatgagtgtggaaacaagtggaattgtatcactgtgttcgggaaacggccacatcgccgcatcaaaa 33366704  T
Q  101 ttggagggggttggaagcatatggttgaagcacgcaacataccaataggtgtaagtaacgaagatcggtgctccaagggttgggaacaatgacacactct 200  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  33366705 ttggagggggttggaagcgtatggttgaagcacgtaacataccaataggtgtaagtaacgaagatcggtgctccaagggttgggaacaatgatacactct 33366804  T
Q  201 acctagaagtcagacgc 217  Q
    |||||||||||||||||    
T  33366805 acctagaagtcagacgc 33366821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 321 - 469
Target Start/End: Original strand, 33366922 - 33367070
Alignment:
Q  321 aagtggaacaattgtagaagttgttgttttgtaagagttgttgacatcatttgaattgaaagaagcattttggcctttggcatttcgaattaagatgcgt 420  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33366922 aagtggaacaattgtagaagttgttgttttgtaagagttgttgatatcatttgaattgaaagaagcattttggcctttggcattttgaattaagatgcgt 33367021  T
Q  421 tgtttggttctgttcttgcaatacaaatgattaaacatgtgtgcctatg 469  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33367022 cgtttggttctgttcttgcaatacaaatgattaaacatgtgtgcctatg 33367070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 49194853 - 49194637
Alignment:
Q  1 ttggggaagaagactacctctgtggtgttgattgatgagtgtggaaacaagtggaattgtatcactgtgttcgggaaacggccacatcgccacatcaaaa 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  49194853 ttggggaagaagactgcctctgtggtgttgattgatgagtgtggaaacaagtggaattgtatcactgtgttcgggaaacggccacatcgcctcatcaaaa 49194754  T
Q  101 ttggagggggttggaagcatatggttgaagcacgcaacataccaataggtgtaagtaacgaagatcggtgctccaagggttgggaacaatgacacactct 200  Q
    |||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||    
T  49194753 ttggagggggttggaagcgtatgtttgaagcacgtaacataccaataggtgtaagtaacgaagttcggtgctccaagggttgggaacaatgatacattct 49194654  T
Q  201 acctagaagtcagacgc 217  Q
    |||||||||||||||||    
T  49194653 acctagaagtcagacgc 49194637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 321 - 469
Target Start/End: Complemental strand, 49194536 - 49194388
Alignment:
Q  321 aagtggaacaattgtagaagttgttgttttgtaagagttgttgacatcatttgaattgaaagaagcattttggcctttggcatttcgaattaagatgcgt 420  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  49194536 aagtggaacaattgtagaagttgttgttttgtaagagttgttgatatcatttgaattgaaagaagcattttggcctttggcattttgaattaagatgcgt 49194437  T
Q  421 tgtttggttctgttcttgcaatacaaatgattaaacatgtgtgcctatg 469  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||    
T  49194436 cgtttggttctgttcttgcaatacaaatgattaaacatgtgtgcctatg 49194388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 39334610 - 39334573
Alignment:
Q  29 tgattgatgagtgtggaaacaagtggaattgtatcact 66  Q
    |||||||||| |||||||||||||||||||||||||||    
T  39334610 tgattgatgactgtggaaacaagtggaattgtatcact 39334573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 41437012 - 41437162
Alignment:
Q  1 ttggggaagaagactacctctgtggtgttgattgatgagtgtggaaacaagtggaattgtatcactgtgttcgggaaacggccacatcgccacatcaaaa 100  Q
    ||||| |||||||||||||| || |||||||||||||| ||||||||||| ||||| ||||||||| | ||| | |||| | ||||||||||||| ||||    
T  41437012 ttgggcaagaagactacctccgttgtgttgattgatgactgtggaaacaaatggaactgtatcactatattcagtaaacagacacatcgccacattaaaa 41437111  T
Q  101 ttggagggggttggaagcatatggttgaagcacgcaacataccaataggtg 151  Q
    |||  ||||||||||||| |||| ||||||| ||||||||  |||||||||    
T  41437112 ttgacgggggttggaagcgtatgcttgaagcgcgcaacatttcaataggtg 41437162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 42934177 - 42934027
Alignment:
Q  1 ttggggaagaagactacctctgtggtgttgattgatgagtgtggaaacaagtggaattgtatcactgtgttcgggaaacggccacatcgccacatcaaaa 100  Q
    ||||| |||||||| ||||| || |||||||||||||| ||||||||||| ||||| ||||||||| | ||| | |||| | ||||||||||||| ||||    
T  42934177 ttgggcaagaagaccacctccgttgtgttgattgatgactgtggaaacaaatggaactgtatcactatattcagtaaacagacacatcgccacattaaaa 42934078  T
Q  101 ttggagggggttggaagcatatggttgaagcacgcaacataccaataggtg 151  Q
    |||| ||||||||||||| |||| ||||||| | |||||| ||||||||||    
T  42934077 ttggtgggggttggaagcgtatgcttgaagcgctcaacattccaataggtg 42934027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 28503467 - 28503430
Alignment:
Q  29 tgattgatgagtgtggaaacaagtggaattgtatcact 66  Q
    |||||||||| |||||||||||||||||||||||||||    
T  28503467 tgattgatgactgtggaaacaagtggaattgtatcact 28503430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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