View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1715_low_39 (Length: 474)

Name: NF1715_low_39
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1715_low_39
NF1715_low_39
[»] chr7 (6 HSPs)
chr7 (1-235)||(33928336-33928570)
chr7 (164-229)||(2461510-2461575)
chr7 (416-457)||(33928752-33928793)
chr7 (305-344)||(33928641-33928680)
chr7 (143-192)||(48892471-48892520)
chr7 (147-195)||(2950124-2950172)
[»] chr6 (2 HSPs)
chr6 (134-229)||(3616955-3617050)
chr6 (147-195)||(3911863-3911911)
[»] scaffold0489 (1 HSPs)
scaffold0489 (150-229)||(10256-10335)
[»] scaffold0140 (1 HSPs)
scaffold0140 (150-229)||(10693-10772)
[»] chr5 (2 HSPs)
chr5 (143-225)||(1318448-1318530)
chr5 (145-189)||(1283900-1283944)
[»] chr3 (3 HSPs)
chr3 (143-228)||(13993366-13993451)
chr3 (145-196)||(33695855-33695906)
chr3 (160-196)||(47846577-47846613)
[»] chr4 (2 HSPs)
chr4 (161-196)||(27808573-27808608)
chr4 (143-189)||(30007814-30007860)


Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 33928336 - 33928570
Alignment:
Q  1 agaagattggtgagaattttgagtattaatcttaagagatgaagtatgattgttgctaacatctaaacttctgtcactaaaactcttggatagataagct 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33928336 agaagattgatgagaattttgagtattaatcttaagagatgaagtatgattgttgctaacatctaaacttctgtcactaaaactcttggatagataagct 33928435  T
Q  101 gttgttgagtttgatggatctaaagctgcatgaaatttgttgagctttttctttagatgtgtgttccaataattctttatatcattatctgttctttgtg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33928436 gttgttgagtttgatggatctaaagctgcatgaaatttgttgagctttttctttagatgtgtgttccaataattctttatatcattatctgttctttgtg 33928535  T
Q  201 gaaggtatgaagctatggctgcccatctgctcaac 235  Q
    |||||||||||||||||||||||||||||||||||    
T  33928536 gaaggtatgaagctatggctgcccatctgctcaac 33928570  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 2461575 - 2461510
Alignment:
Q  164 ttccaataattctttatatcattatctgttctttgtggaaggtatgaagctatggctgcccatctg 229  Q
    |||||||| || ||||| ||||||||||||||||||||||||||||| ||||| || |||||||||    
T  2461575 ttccaatagttttttatgtcattatctgttctttgtggaaggtatgatgctattgcagcccatctg 2461510  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 416 - 457
Target Start/End: Original strand, 33928752 - 33928793
Alignment:
Q  416 gagtgaagataattataattatgagatgtgaagattattact 457  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  33928752 gagtgaagataattataattatgagatgtgaagattattact 33928793  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 344
Target Start/End: Original strand, 33928641 - 33928680
Alignment:
Q  305 atgtaacattcaatcaaaattaatatcaattcatatatat 344  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33928641 atgtaacattcaatcaaaattaatatcaattcatatatat 33928680  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 48892471 - 48892520
Alignment:
Q  143 agctttttctttagatgtgtgttccaataattctttatatcattatctgt 192  Q
    ||||||||  |||||||||||||||| ||||||||||| |||||||||||    
T  48892471 agctttttacttagatgtgtgttccagtaattctttatctcattatctgt 48892520  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 2950172 - 2950124
Alignment:
Q  147 ttttctttagatgtgtgttccaataattctttatatcattatctgttct 195  Q
    ||||||| ||||||||||||||||| ||||| || ||||||||||||||    
T  2950172 ttttcttaagatgtgtgttccaatagttcttgatttcattatctgttct 2950124  T

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Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 134 - 229
Target Start/End: Complemental strand, 3617050 - 3616955
Alignment:
Q  134 aatttgttgagctttttctttagatgtgtgttccaataattctttatatcattatctgttctttgtggaaggtatgaagctatggctgcccatctg 229  Q
    ||||| || ||||||||||| | ||  ||||||||||| || ||||| ||||| |||||||||||||||||||||| ||||||||| |||||||||    
T  3617050 aattttttcagctttttcttcaaataagtgttccaatagttttttatgtcattgtctgttctttgtggaaggtatgcagctatggcagcccatctg 3616955  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 3911911 - 3911863
Alignment:
Q  147 ttttctttagatgtgtgttccaataattctttatatcattatctgttct 195  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  3911911 ttttcttaagatgtgtgttccaataattctttatctcattatctgttct 3911863  T

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Target: scaffold0489 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0489
Description:

Target: scaffold0489; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 150 - 229
Target Start/End: Original strand, 10256 - 10335
Alignment:
Q  150 tctttagatgtgtgttccaataattctttatatcattatctgttctttgtggaaggtatgaagctatggctgcccatctg 229  Q
    |||||| |||||| ||||||||||| ||||| ||||| ||||| ||||||||||| ||||||||||| || |||||||||    
T  10256 tctttaaatgtgtattccaataattttttatgtcattgtctgtcctttgtggaagatatgaagctatagcagcccatctg 10335  T

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Target: scaffold0140 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 150 - 229
Target Start/End: Complemental strand, 10772 - 10693
Alignment:
Q  150 tctttagatgtgtgttccaataattctttatatcattatctgttctttgtggaaggtatgaagctatggctgcccatctg 229  Q
    |||||| |||||| ||||||||||| ||||| ||||| ||||| ||||||||||| ||||||||||| || |||||||||    
T  10772 tctttaaatgtgtattccaataattttttatgtcattgtctgtcctttgtggaagatatgaagctatagcagcccatctg 10693  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 143 - 225
Target Start/End: Original strand, 1318448 - 1318530
Alignment:
Q  143 agctttttctttagatgtgtgttccaataattctttatatcattatctgttctttgtggaaggtatgaagctatggctgccca 225  Q
    ||||||||||||| ||||||||||||| |||||||||| ||||||||||| |||  |||||| | ||  ||||| ||||||||    
T  1318448 agctttttctttaaatgtgtgttccaaaaattctttatctcattatctgtccttcctggaagatgtgttgctatagctgccca 1318530  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 1283944 - 1283900
Alignment:
Q  145 ctttttctttagatgtgtgttccaataattctttatatcattatc 189  Q
    ||||||||||| ||| ||||||||| |||||||||| ||||||||    
T  1283944 ctttttctttaaatgggtgttccaaaaattctttatttcattatc 1283900  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 13993366 - 13993451
Alignment:
Q  143 agctttttctttagatgtgtgttccaataattctttatatcattatctgttctttgtggaaggtatgaagctatggctgcccatct 228  Q
    ||||||||| | | |||||| |||||||| || || || ||||| |||||||||| |||||| || ||||||||||| ||||||||    
T  13993366 agctttttcctcaaatgtgtattccaatagtttttgatgtcattgtctgttctttctggaagataggaagctatggcagcccatct 13993451  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 196
Target Start/End: Complemental strand, 33695906 - 33695855
Alignment:
Q  145 ctttttctttagatgtgtgttccaataattctttatatcattatctgttctt 196  Q
    ||||||||| ||||| ||||||||  |||||||||| |||||||||||||||    
T  33695906 ctttttcttcagatgagtgttccagaaattctttatctcattatctgttctt 33695855  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 47846577 - 47846613
Alignment:
Q  160 tgtgttccaataattctttatatcattatctgttctt 196  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  47846577 tgtgttccaatagttctttatatcattatcggttctt 47846613  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 196
Target Start/End: Complemental strand, 27808608 - 27808573
Alignment:
Q  161 gtgttccaataattctttatatcattatctgttctt 196  Q
    |||||||||||||||||||| |||||||||||||||    
T  27808608 gtgttccaataattctttatctcattatctgttctt 27808573  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 30007860 - 30007814
Alignment:
Q  143 agctttttctttagatgtgtgttccaataattctttatatcattatc 189  Q
    ||||||||||||| ||| ||||||||| |||||||||| ||||||||    
T  30007860 agctttttctttaaatgagtgttccaaaaattctttatttcattatc 30007814  T

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