View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1715_low_4 (Length: 649)

Name: NF1715_low_4
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1715_low_4
NF1715_low_4
[»] chr1 (2 HSPs)
chr1 (298-567)||(11878183-11878452)
chr1 (13-245)||(11877897-11878129)


Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 298 - 567
Target Start/End: Original strand, 11878183 - 11878452
Alignment:
Q  298 ggtgttgaacttgcactattggcatagtaataattcctcattctgtcttcttccccccacatattgcccacaccagttcatacattatatacatttacat 397  Q
    |||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11878183 ggtgatgaacttccactattggcatagtaataactcctcattctgtcttcttccccccacatattgcccacaccagttcatacattatatacatttacat 11878282  T
Q  398 aattaagttgtataattaagggtatcatgtttttaatattgattttggttagatatttgtaccatattctataattcatgctcataaccccacaaatacg 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11878283 aattaagttgtataattaagggtatcatgtttttaatattgattttggttagatatttgtaccatattctataattcatgctcataaccccacaaatacg 11878382  T
Q  498 tggacatgtagtaggaaatacaaagctaaatttggattattctttatcacaaactaccaaaaggttatgt 567  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11878383 tggacatgtagtaggaaatacaaagctaaatttggattattctttatcacaaactaccaaaaggttatgt 11878452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 13 - 245
Target Start/End: Original strand, 11877897 - 11878129
Alignment:
Q  13 aatataagcacattccaacaaaatttcaagataagaaaaactcgaatgattatttttaaaactaatcttaaaatctgcatatttctttcaaaaacatttc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11877897 aatataagcacattccaacaaaatttcaagataagaaaaactcgaataattatttttaaaactaatcttaaaatctgcatatttctttcaaaaacatttc 11877996  T
Q  113 ttagttatagttttatatatacttttctccatcaaaagctgcaatgttaatctcattattgcactttttccgggcattgttgacaacattatatctcaca 212  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11877997 ttagatatagttttatatatacttttctccatcaaaagctgcaatgttaatctcattattgcactttttccgggcattgttgacaacattatatctcaca 11878096  T
Q  213 tgttaatctcattattgagaagtcacatggctt 245  Q
    |||||||||||||||||||||||||||||||||    
T  11878097 tgttaatctcattattgagaagtcacatggctt 11878129  T

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