View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_40 (Length: 471)
Name: NF1715_low_40
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 5 - 460
Target Start/End: Complemental strand, 50508218 - 50507762
Alignment:
| Q |
5 |
tgtcgaagaatatgatactttggtgttagtgatcgatgtggacgcataaaacaatgacctgtttcaatttatttaaagtgtgtttgtgttatttccatct |
104 |
Q |
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| T |
50508218 |
tgtcgaaaattatgatactttggtgttagtgatcgatgtggacgcataaaacaatgacctgtttcaatttatttaaagtgtgtttgtgttatttccatct |
50508119 |
T |
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| Q |
105 |
tccgcttt--cattcataatgtaagaaggtgattaaacatcaacaaccgcatgggaatgtattgaactatagctcggtcacacttttaaatgttgaaatg |
202 |
Q |
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| T |
50508118 |
tccgctttatcattcataatgtaagaaggtgattcaacatcaacaaccgcatgggaatgtattgaactatagcttggtcacacttttaaatgctgaaatg |
50508019 |
T |
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| Q |
203 |
aatgtgcttcaaaagaaatgttgaaatagtgctattgtaacaaaacttagtccaaaccctaaaaaactaaattgtattatttagacacacaaaacacgac |
302 |
Q |
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| T |
50508018 |
aatgtgcttcaaaagaaatgttgaaatagtgctattgtaacaaaacttagtccaaaccctaaaaaactaaattgtattatttagacacacaaaacacgac |
50507919 |
T |
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| Q |
303 |
attttaaattgtccaatattatatacaaaatacactcgatcaagtttgaatttcatcggacatgagagaaaataatgattaaaaaatacaaacgatggtt |
402 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
50507918 |
attttaaattgtccaatattatatataaaatacactcgatcaagtttgaatttcatcggacatgagagaaaataatgattaaaaaatacaaacgat-gtt |
50507820 |
T |
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| Q |
403 |
ataaattgtgtttccagtttccatgtaattccaaatgaaagtcacgtatgaacaaatt |
460 |
Q |
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|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
50507819 |
ataaattgtgtttccagtttccatgtaactccaaaagaaagtcacgtatgaacaaatt |
50507762 |
T |
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