View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_41 (Length: 465)
Name: NF1715_low_41
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_41 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 25 - 457
Target Start/End: Complemental strand, 11798093 - 11797673
Alignment:
| Q |
25 |
ctaaaaaagtgaagaattgaactaaccaaaatatagatgagagaagcaagtatgattgtgcggtagcgtccaagaaaagaatcagcnnnnnnngcaccta |
124 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
11798093 |
ctaaaaaagtgaagaattgaactaaccataatatagatgagagaagcaagtatgattgtgcggtagcgtccaagaaaagaatcagcaatgaaagcaccaa |
11797994 |
T |
|
| Q |
125 |
acaggggaaggagagcagcagttccagcccaaatattgacattcttagcagctgttacagtgctttgtttgagtggtcctgttagatatgatatcaaatt |
224 |
Q |
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| || ||||| |||| |||||||||| |||||| ||| ||||| | ||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11797993 |
agagaggaagtagagaagcagttccaacccaaacattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaatt |
11797894 |
T |
|
| Q |
225 |
cccctgaatcccataaaatgatatcctctctgccacttccacacctaaacaaaacattcataattcatttcaattctcattgcatttagaaacacaataa |
324 |
Q |
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||| ||||| |||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11797893 |
cccttgaattccataatatgataccctctctgccacttccacacctaaacataacattcataattcatttcaattctcattgcatttagaaacacaataa |
11797794 |
T |
|
| Q |
325 |
acnnnnnnnnnnntgttaatcgaaacgaaaagaattgattatgagtttgatccatctgtctatgaagcatggacacaaacatggacacatgacacgacat |
424 |
Q |
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| ||||||||||||||| ||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11797793 |
ataaataaaaaaatgttaatcgaaacgacaagaactaattatgagtttgatccatctgtctatgaag------------catggacacatgacacgacat |
11797706 |
T |
|
| Q |
425 |
tgacacgggcacatcaacaccaataaaattttg |
457 |
Q |
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| T |
11797705 |
tgacacgggcacatcaacaccaataaaattttg |
11797673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 43 - 304
Target Start/End: Complemental strand, 11702031 - 11701770
Alignment:
| Q |
43 |
gaactaaccaaaatatagatgagagaagcaagtatgattgtgcggtagcgtccaagaaaagaatcagcnnnnnnngcacctaacaggggaaggagagcag |
142 |
Q |
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||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| || ||||| |||| || |
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| T |
11702031 |
gaactgaccaagatatagataagagaagcaagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcacctaagagaggaagtagagaag |
11701932 |
T |
|
| Q |
143 |
cagttccagcccaaatattgacattcttagcagctgttacagtgctttgtttgagtggtcctgttagatatgatatcaaattcccctgaatcccataaaa |
242 |
Q |
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| ||||||||||||| ||| |||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||| | |
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| T |
11701931 |
ctgttccagcccaaacatttacattcttagcagctgttgcagtgctctgtttgagtggccctgttagatatgatatcaaattcccttgaattccataata |
11701832 |
T |
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| Q |
243 |
tgatatcctctctgccacttccacacctaaacaaaacattcataattcatttcaattctcat |
304 |
Q |
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||||| ||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||| |
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| T |
11701831 |
tgataccctctctgccacttccacacctaaacataacattcataatccatttaaattctcat |
11701770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 49 - 301
Target Start/End: Complemental strand, 11676132 - 11675880
Alignment:
| Q |
49 |
accaaaatatagatgagagaagcaagtatgattgtgcggtagcgtccaagaaaagaatcagcnnnnnnngcacctaacaggggaaggagagcagcagttc |
148 |
Q |
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||||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| || || |||||||||| |||| || |
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| T |
11676132 |
accaagatataaatgagagaagcgagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcaccaaagagaggaaggagagaagcaactc |
11676033 |
T |
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| Q |
149 |
cagcccaaatattgacattcttagcagctgttacagtgctttgtttgagtggtcctgttagatatgatatcaaattcccctgaatcccataaaatgatat |
248 |
Q |
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||||||||||||| ||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||| |
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| T |
11676032 |
cagcccaaatattcacattctcagcagcagttgcagtgctttgtttgagtggtcctgttagatatgatatcaagttcccttgaatcccataatatgatac |
11675933 |
T |
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| Q |
249 |
cctctctgccacttccacacctaaacaaaacattcataattcatttcaattct |
301 |
Q |
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||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
11675932 |
cctctctgccacttccacacctatacaaaacattcataactcatttcaattct |
11675880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 49 - 301
Target Start/End: Complemental strand, 11684411 - 11684159
Alignment:
| Q |
49 |
accaaaatatagatgagagaagcaagtatgattgtgcggtagcgtccaagaaaagaatcagcnnnnnnngcacctaacaggggaaggagagcagcagttc |
148 |
Q |
| |
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||||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| || || |||||||||| |||| || |
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| T |
11684411 |
accaagatataaatgagagaagcgagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcaccaaagagaggaaggagagaagcaactc |
11684312 |
T |
|
| Q |
149 |
cagcccaaatattgacattcttagcagctgttacagtgctttgtttgagtggtcctgttagatatgatatcaaattcccctgaatcccataaaatgatat |
248 |
Q |
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||||||||||||| ||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||| |
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| T |
11684311 |
cagcccaaatattcacattctcagcagcagttgcagtgctttgtttgagtggtcctgttagatatgatatcaagttcccttgaatcccataatatgatac |
11684212 |
T |
|
| Q |
249 |
cctctctgccacttccacacctaaacaaaacattcataattcatttcaattct |
301 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
11684211 |
cctctctgccacttccacacctatacaaaacattcataactcatttcaattct |
11684159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 48 - 293
Target Start/End: Complemental strand, 11696229 - 11695984
Alignment:
| Q |
48 |
aaccaaaatatagatgagagaagcaagtatgattgtgcggtagcgtccaagaaaagaatcagcnnnnnnngcacctaacaggggaaggagagcagcagtt |
147 |
Q |
| |
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|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || || ||||| |||| ||||||| |
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| T |
11696229 |
aaccaatatatagatgagagaagcaagcatgattgtgcggtagcgtccaagaaaagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagtt |
11696130 |
T |
|
| Q |
148 |
ccagcccaaatattgacattcttagcagctgttacagtgctttgtttgagtggtcctgttagatatgatatcaaattcccctgaatcccataaaatgata |
247 |
Q |
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|||||||||||||| ||||| | ||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||| |
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| T |
11696129 |
ccagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttgaattccataatatgatg |
11696030 |
T |
|
| Q |
248 |
tcctctctgccacttccacacctaaacaaaacattcataattcatt |
293 |
Q |
| |
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||||||||||| ||||||||||||| | |||||||| |||||||| |
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| T |
11696029 |
ccctctctgccatttccacacctaaatataacattcacaattcatt |
11695984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 29 - 273
Target Start/End: Complemental strand, 11779227 - 11778983
Alignment:
| Q |
29 |
aaaagtgaagaattgaactaaccaaaatatagatgagagaagcaagtatgattgtgcggtagcgtccaagaaaagaatcagcnnnnnnngcacctaacag |
128 |
Q |
| |
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|||||||||||| |||| |||||| | |||||| ||||||||||||||||||||| | ||||||||||||||||||||||| ||||| || || |
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| T |
11779227 |
aaaagtgaagaacagaaccaaccaatacatagataagagaagcaagtatgattgtgtgatagcgtccaagaaaagaatcagcaatgaatgcaccaaagag |
11779128 |
T |
|
| Q |
129 |
gggaaggagagcagcagttccagcccaaatattgacattcttagcagctgttacagtgctttgtttgagtggtcctgttagatatgatatcaaattcccc |
228 |
Q |
| |
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|||||||||| ||||||||||||||||| ||| |||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||| || ||| |
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| T |
11779127 |
aggaaggagagaagcagttccagcccaaacattcacattcttagcagcagttgcagtgctttgtttgagtggccctgttagatatgatatcaagtttccc |
11779028 |
T |
|
| Q |
229 |
tgaatcccataaaatgatatcctctctgccacttccacacctaaa |
273 |
Q |
| |
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| || |||| || |||| |||||||||||||| |||||||||||| |
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| T |
11779027 |
ttaaccccaaaatatgacatcctctctgccacctccacacctaaa |
11778983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 167; Significance: 3e-89; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 29 - 304
Target Start/End: Complemental strand, 16690 - 16415
Alignment:
| Q |
29 |
aaaagtgaagaattgaactaaccaaaatatagatgagagaagcaagtatgattgtgcggtagcgtccaagaaaagaatcagcnnnnnnngcacctaacag |
128 |
Q |
| |
|
|||||||||||| |||| |||||| |||||||| ||||||||||||||||||||| | ||||||||||||||||||||||| |||||||| || |
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| T |
16690 |
aaaagtgaagaacagaaccaaccaatatatagataagagaagcaagtatgattgtgtgatagcgtccaagaaaagaatcagcaacgaaagcacctaagag |
16591 |
T |
|
| Q |
129 |
gggaaggagagcagcagttccagcccaaatattgacattcttagcagctgttacagtgctttgtttgagtggtcctgttagatatgatatcaaattcccc |
228 |
Q |
| |
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||||| |||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||| |
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|
| T |
16590 |
aggaagtagagaagcagttccagcccaaatattcacattcttagcagctgttgcagtgctttgtttgagtggtcctgttagatatgatatcaagtttccc |
16491 |
T |
|
| Q |
229 |
tgaatcccataaaatgatatcctctctgccacttccacacctaaacaaaacattcataattcatttcaattctcat |
304 |
Q |
| |
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| ||||||| | |||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
16490 |
ttaatcccaatatatgatatcctctctgctacttccacacctaaacataacattcataatccatttcaattctcat |
16415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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