View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_45 (Length: 451)
Name: NF1715_low_45
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 19 - 425
Target Start/End: Original strand, 39836159 - 39836565
Alignment:
| Q |
19 |
gaagtaatgtaatgtattggaagagttttgagctaattttctatatgtagaaactaagctccgataaagggatatatataggttgcattcatagtgttga |
118 |
Q |
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| T |
39836159 |
gaagtaatgtaatgtattggaagagttttgagctaattttctatatgtagaaactaagctccgataaagggatatatataggttgcattcatagtgttga |
39836258 |
T |
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| Q |
119 |
agattgcatattgtttgaatgagatgtcaatatagtaaaagaataagatcttaagagaaaattttagcggattcccgagactgtttctgttctgcatgtg |
218 |
Q |
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| T |
39836259 |
agattgcatattgtttgaatgagatgtctatatagtaaaagaataagatcttaagagaaaattttagcggattcccgagactgtttctgttctgcatgtg |
39836358 |
T |
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| Q |
219 |
tgtttctattcataacaagttgcattattagacaatgcatgtgaaggtaaatataatgaatccaagattttctataagataagattcttgctcgtacata |
318 |
Q |
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| T |
39836359 |
tgtttctattcataacaagttgcattattagacaatacatgtgaaggtaaatataatgaatccaagattttctataagataagattcttgctcgtacata |
39836458 |
T |
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| Q |
319 |
aggtatatttttgtccatatatccggcaatctaattaactacatacttattatcaccataatatggttttgcaacactagctctgtatattactacttaa |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39836459 |
aggtatatttttgtccatatatccggcaatctaattaactacatacttattatcaccataatatggttttgcaacactaactctgtatattactacttaa |
39836558 |
T |
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| Q |
419 |
ttagcag |
425 |
Q |
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| T |
39836559 |
ttagcag |
39836565 |
T |
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