View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_46 (Length: 448)
Name: NF1715_low_46
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 13 - 403
Target Start/End: Complemental strand, 26764776 - 26764386
Alignment:
| Q |
13 |
gaacgacgaagagaagaagagtgcgatgatccatgaaatgaggataggatatagaaaatcgcagaatagaataaggaaaggtgtgagtttctattatata |
112 |
Q |
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| T |
26764776 |
gaacgacgaagagaagaagagtgcgatgatccatgacttgaggataggatatagaaaatcgcagaatagaataaggaaaggtgtgagtttctattatata |
26764677 |
T |
|
| Q |
113 |
gaggttgcacttgcggtacgtaaggaattnnnnnnnnnnnnnnngattaagattgaattgagtacgcgctatcgattacttaggagagaggtaaggtttg |
212 |
Q |
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| T |
26764676 |
gaggttgcacttgcggtacgtaaggaattaaaaaaagtaaaaaagattaagattgaattgagtacgcgctatcgattacttaggagagaggtaaggtttg |
26764577 |
T |
|
| Q |
213 |
gtaacaaatagataaatgacacgtgggttttgttcgttcaaatttgaatgacggttataagaaactgatagttaggattttcctttactgttaggttaga |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26764576 |
gtaacaaatagataaatgacacgtgggttttgttcgttcaaatttgaatgacggttataagaaactgatagttaggattttcctttactgttaggttaga |
26764477 |
T |
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| Q |
313 |
aaattgctttcccaatcaaaattgctcattcccacatataactagcgcaaataacaacaaacgtgctaagaggtataaattgaggattttg |
403 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26764476 |
aaattgctttcccaatcaaaattgctcattctcacatataactagcgaaaataacaacaaacgtgttaagaggtataaattgaggattttg |
26764386 |
T |
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