View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_47 (Length: 440)
Name: NF1715_low_47
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 18 - 422
Target Start/End: Complemental strand, 54985975 - 54985565
Alignment:
| Q |
18 |
atacagattcagcatccaatatcacctcaatctactatgatagaagaacacaatcagcatctgaaaatcaaccatgtaaat-----aagtgaatgtagtc |
112 |
Q |
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||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
54985975 |
atacagattcagcatcctatatcaactcaatctactatgatagaagaacacaatcagcatctgaaaatcaaccatgtaaattaaataagtgaatgtagtc |
54985876 |
T |
|
| Q |
113 |
ttaccaatcatattgaaattaagttctgtgacagcagcaagtgcacaacctccaataattggtagtagtgaaaggtaaacttgtaaagggaacgcttcac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54985875 |
ttaccaatcatattgaaattaagttctgtgacagcagcaagtgcacaacctccaataattggtagtagtgaaaggtaaacttgtaaagggaacgcttcac |
54985776 |
T |
|
| Q |
213 |
caagcaagaatcttgatacaagaacactgaaagcaggttctccacttttgattatgtgtgtaaatgaaactgcaactttggacatactcacagtagccgc |
312 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54985775 |
caagcaagaattttgatacaagaacactgaaagcaggttctccacttttgattatgtgtgtaaatgaaactgcaactttggacatactcacagtagccgc |
54985676 |
T |
|
| Q |
313 |
aacatgcccaattgtatgtgccacagcaacctgcagtttaaattct-cattcagtactaaatcaatatttccgtatttcaaaagcaagaatcttacttga |
411 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54985675 |
aacatgcccaattgtatgtgccacagcaacctgcagtttaaattctccattcagtactaaatcaatatttccgtatttcaaaagcaagaatcttacttga |
54985576 |
T |
|
| Q |
412 |
tgcaaaagtct |
422 |
Q |
| |
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||||||||||| |
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| T |
54985575 |
tgcaaaagtct |
54985565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 5e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 114 - 344
Target Start/End: Complemental strand, 7883437 - 7883207
Alignment:
| Q |
114 |
taccaatcatattgaaattaagttctgtgacagcagcaagtgcacaacctccaataattggtagtagtgaaaggtaaacttgtaaagggaacgcttcacc |
213 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| ||||||||||| ||||| ||||| | | ||| ||||||||| | | |||||| ||||| || |
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|
| T |
7883437 |
taccaatcatattgaaattgagttctgttacagcagctagtgcacaaccaccaattattggcaacaatgagaggtaaactggcatagggaatgcttctcc |
7883338 |
T |
|
| Q |
214 |
aagcaagaatcttgatacaagaacactgaaagcaggttctccacttttgattatgtgtgtaaatgaaactgcaactttggacatactcacagtagccgca |
313 |
Q |
| |
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|||||||||||||||||| || ||||||||||| ||||||||||| ||||| ||||| || ||||||||||| |||||||||||||||||||| || ||| |
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|
| T |
7883337 |
aagcaagaatcttgatactagcacactgaaagctggttctccactcttgatgatgtgagtgaatgaaactgctactttggacatactcacagttgcagca |
7883238 |
T |
|
| Q |
314 |
acatgcccaattgtatgtgccacagcaacct |
344 |
Q |
| |
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|||||||||||||| ||||||||||| |||| |
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|
| T |
7883237 |
acatgcccaattgtgtgtgccacagctacct |
7883207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 113 - 350
Target Start/End: Complemental strand, 18396224 - 18395987
Alignment:
| Q |
113 |
ttaccaatcatattgaaattaagttctgtgacagcagcaagtgcacaacctccaataattggtagtagtgaaaggtaaacttgtaaagggaacgcttcac |
212 |
Q |
| |
|
|||||||||||||||||||| ||||| || ||||||||||||||||| || ||||| ||||| | || || || || ||| | | ||||| | ||||| |
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|
| T |
18396224 |
ttaccaatcatattgaaattgagttcagtcacagcagcaagtgcacatccaccaatgattggaattaaagacagatagactggcacggggaaggtttcac |
18396125 |
T |
|
| Q |
213 |
caagcaagaatcttgatacaagaacactgaaagcaggttctccacttttgattatgtgtgtaaatgaaactgcaactttggacatactcacagtagccgc |
312 |
Q |
| |
|
| | | ||||| || || |||||||| |||||||| || ||||| ||||| || |||||||| || || || |||||||||||||| || |||||||| |
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|
| T |
18396124 |
ccaagataaatctcgaaaccagaacactaaaagcaggctcgccactcttgatgatatgtgtaaacgacacagccactttggacatactaaccgtagccgc |
18396025 |
T |
|
| Q |
313 |
aacatgcccaattgtatgtgccacagcaacctgcagtt |
350 |
Q |
| |
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||||| |||||||| ||||| ||||||||||| |||| |
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|
| T |
18396024 |
gacatgtccaattgtgtgtgcaacagcaacctgaagtt |
18395987 |
T |
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