View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_48 (Length: 439)
Name: NF1715_low_48
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 15 - 303
Target Start/End: Complemental strand, 1738302 - 1738009
Alignment:
| Q |
15 |
atgcacactttcaaagatatgagtttttgagtagcaaaggcagggaaaagaagtgcnnnnnnnnnnnnnattatcaatcaccatcactaaaataatgccg |
114 |
Q |
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| T |
1738302 |
atgcacactttcaaagatatgagattttgagtagcaaaggcagggaaaagaagtgcatatatatatag--ttatcaatctccatcactaaaataatgccg |
1738205 |
T |
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| Q |
115 |
ttgaagtttcaagtgcactcatgtttgtaaaaaataaaataagtgcactcatgttggttatgtaagtcaaactaaacaaaaat-aataaaaggagctttc |
213 |
Q |
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| T |
1738204 |
ttgaagtttcaagtgcactcatgtttgtaaaaaataaaataagtgcactcatgttggttatgtaagtcaaactaaacaaaaataaataaaaggagctttc |
1738105 |
T |
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| Q |
214 |
ttttagaaatgagtcattggtaatttcatgaatggaagtatgtagatctagt------agtgtatcattgacatcttccacccatttggcttgatt |
303 |
Q |
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| T |
1738104 |
ttttagaaatgagtcattggtaatttcatgaatggcagtatgtagatctagtagtgtaagtgtaccattgacatcttccacccatttggcttgatt |
1738009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 102 - 419
Target Start/End: Complemental strand, 1716829 - 1716498
Alignment:
| Q |
102 |
taaaataatgccgttgaagtttcaagtgcactcatgtttgtaaaaaataaaataagtgcactcatgttggttatgtaagtcaa------------actaa |
189 |
Q |
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| T |
1716829 |
taaaataatgtcgttgaagtttcaagtgcactcatgttttaaaaaaaaataaaaagtgcaatcatgttggttatgtaaggcaagctataataataactat |
1716730 |
T |
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| Q |
190 |
acaaaaataa-taaaaggagctttcttttagaaatgagtcattggtaatttcatgaatggaagtatgtagatctagtagtgtatcattgacatcttccac |
288 |
Q |
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| T |
1716729 |
acaaaaataaataaaaggagctttatttcagaaatgagtcaatgataatttcatgaatgacaatatgtagatctagtagtgtacccttgacatcttacgc |
1716630 |
T |
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| Q |
289 |
ccatttggcttgattgccatgctcatcaaaatgactgtatttcaatacattagcaaatacaaataaattcaccttatttcccacatctagccgaaactc- |
387 |
Q |
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| T |
1716629 |
tcgtttgacttgagttctatgctcatcaaaacgactctatttcaatacattagcagataaaaataagttcaccttattttccatatgaagttgaaactct |
1716530 |
T |
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| Q |
388 |
agactgtttaatttaggttatttcaaaactta |
419 |
Q |
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| T |
1716529 |
taactgtttactttaggttatttcaaaactta |
1716498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 33577697 - 33577656
Alignment:
| Q |
330 |
tcaatacattagcaaatacaaataaattcaccttatttccca |
371 |
Q |
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| T |
33577697 |
tcaatacattagcaaataaaactaaaatcaccttatttccca |
33577656 |
T |
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