View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_50 (Length: 438)
Name: NF1715_low_50
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 15 - 384
Target Start/End: Complemental strand, 9363701 - 9363327
Alignment:
| Q |
15 |
gatgtgtagctgaagccggatactcaagttgtttctaagcgacggaatgagtcaccttggttagcaggaagagttgaattgataaggaatgtagctccat |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
9363701 |
gatgtgtagctgaagccggatactcaagttgtttctaagcgacggaatgagtcaccttggttagcgggaagagttgaattgataaggaatgtagctccat |
9363602 |
T |
|
| Q |
115 |
ccatttgtatctctcttcttgagtggtgtgacaccacacttctctcatgtaaaaatctcgcatgaggggatccattcccggtggaatcg-----tgaatg |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
9363601 |
ccatttgtatctctcttcttgagtggtgtgacaccacacttctctcatgtaaaaatctcacatgaggggatccattcccggtggaatcgaatcgtgaatg |
9363502 |
T |
|
| Q |
210 |
gggatgacctatggtggaagaaaggcctactgaagtgccacaaagatctcaaagccagagtagaatatggtagatgaagaaaaaggaaattgaagaccag |
309 |
Q |
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| T |
9363501 |
gggatgacctatggtggaagaaaggcctactgaagtgccacaaagatctcaaagccagaatagaatatggtagatgaagaaaaaggaaattgaagaccag |
9363402 |
T |
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| Q |
310 |
atgtacatgtcttcttttctttccttttatttggtttaattgcgagaatcctgcgatagttgttatatgcaatac |
384 |
Q |
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| T |
9363401 |
atgtacatgtcttcttttctttccttttatttggtttaattgcgagaatcctgcgatagttgttatatgcaatac |
9363327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 15 - 344
Target Start/End: Original strand, 29462245 - 29462577
Alignment:
| Q |
15 |
gatgtgtagctgaagccggatactcaagttgtttctaagcgacggaatgagtcaccttggttagcaggaagagttgaattgataaggaatgtagctccat |
114 |
Q |
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|||||||||| ||| || || ||||||||||||||| | | ||||| |||||||||| || | ||||| |||||||||||||||||||||||||| |
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| T |
29462245 |
gatgtgtagcagaaaccaaatgctcaagttgtttcta-gtaatggaattagtcaccttgttttgtgggaaggattgaattgataaggaatgtagctccac |
29462343 |
T |
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| Q |
115 |
ccatttgtatctctcttcttgagtggtgtgacaccacact--tctctcatgtaaaaatctcgcatgaggggatccattcccggtggaatcgtgaatgggg |
212 |
Q |
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|||||||||||||||||| | |||| ||||| || ||| |||||| |||||||||||| ||||||||||||| || |||||||||| ||||||||| |
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| T |
29462344 |
acatttgtatctctcttctgaaatggtatgacatca-acttctctctcgtgtaaaaatctcacatgaggggatccgtttccggtggaattatgaatgggg |
29462442 |
T |
|
| Q |
213 |
atgacctatggtggaagaaaggcctactgaagtgccacaaagatctcaaagccagagtagaatatggtagatgaagaaaaaggaaattgaagaccagat- |
311 |
Q |
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||||||||||||| ||||||||||||| ||||| |||||||||||| ||||||| |||||||| | ||||||||||||| ||||||||||| | ||| |
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| T |
29462443 |
atgacctatggtgaaagaaaggcctacaaaagtgtgacaaagatctcagagccagaatagaatattgaagatgaagaaaaaagaaattgaagatcggata |
29462542 |
T |
|
| Q |
312 |
--gtacatgtcttcttttctttccttttatttggt |
344 |
Q |
| |
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|| |||||||||||||||||||||||||||| |
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| T |
29462543 |
ccagacgtgtcttcttttctttccttttatttggt |
29462577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 88 - 260
Target Start/End: Original strand, 29449472 - 29449647
Alignment:
| Q |
88 |
ttgaattgataaggaatgtagctccatccatttgtatctctcttcttgagtggtgtgacaccacacttctctc--atgtaaaaatctcgcatgaggggat |
185 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||| ||||| || |||||||||| |||||||||||| |||||||||||| || |||||||| |
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| T |
29449472 |
ttgaattgataaggaatgtagctccacccatttgtatctcacttctggaatggtgtgacatcacacttctctcttgtgtaaaaatctcacacgaggggat |
29449571 |
T |
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| Q |
186 |
ccattcccggtggaatcgtgaatggggatgacctatggtggaag-aaaggcctactgaagtgccacaaagatctca |
260 |
Q |
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|||||||| ||||||| ||||||||||||||||| ||||| ||| ||||||| | |||||| |||||||||||| |
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| T |
29449572 |
ccattccccgtggaattgtgaatggggatgacctttggtgaaagaaaaggccaatagaagtgtgacaaagatctca |
29449647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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