View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1715_low_55 (Length: 423)

Name: NF1715_low_55
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1715_low_55
NF1715_low_55
[»] chr8 (13 HSPs)
chr8 (302-407)||(28860207-28860312)
chr8 (302-406)||(4241564-4241668)
chr8 (109-162)||(28860501-28860554)
chr8 (302-406)||(17021698-17021802)
chr8 (302-406)||(17552135-17552239)
chr8 (302-406)||(8329863-8329967)
chr8 (111-158)||(43325589-43325636)
chr8 (302-406)||(19431117-19431221)
chr8 (302-406)||(19567266-19567370)
chr8 (312-405)||(4540984-4541077)
chr8 (109-158)||(9636150-9636199)
chr8 (302-406)||(21959889-21959993)
chr8 (109-158)||(9579250-9579299)
[»] chr4 (12 HSPs)
chr4 (302-405)||(13060898-13061001)
chr4 (302-402)||(33467620-33467720)
chr4 (302-406)||(37263122-37263226)
chr4 (309-406)||(19103408-19103505)
chr4 (302-406)||(7899439-7899543)
chr4 (302-406)||(8028889-8028993)
chr4 (110-158)||(11671762-11671810)
chr4 (342-405)||(19907721-19907784)
chr4 (312-406)||(24491172-24491266)
chr4 (309-406)||(17681662-17681759)
chr4 (318-394)||(12875782-12875858)
chr4 (342-406)||(17681860-17681924)
[»] chr7 (8 HSPs)
chr7 (303-405)||(12802714-12802816)
chr7 (302-406)||(10391653-10391757)
chr7 (302-405)||(2596202-2596305)
chr7 (303-404)||(15975303-15975404)
chr7 (308-406)||(14783946-14784044)
chr7 (308-406)||(15233979-15234077)
chr7 (311-406)||(7018152-7018247)
chr7 (311-406)||(7033510-7033605)
[»] chr2 (11 HSPs)
chr2 (309-406)||(44630049-44630146)
chr2 (302-406)||(9183976-9184080)
chr2 (302-406)||(17973909-17974013)
chr2 (309-406)||(25483336-25483433)
chr2 (309-406)||(25490942-25491039)
chr2 (302-406)||(30652347-30652451)
chr2 (303-406)||(24536578-24536681)
chr2 (110-158)||(11738686-11738734)
chr2 (303-399)||(13290241-13290337)
chr2 (303-406)||(15445852-15445955)
chr2 (309-406)||(14912890-14912986)
[»] chr6 (6 HSPs)
chr6 (302-402)||(19992967-19993067)
chr6 (302-402)||(16834720-16834820)
chr6 (302-406)||(10486179-10486283)
chr6 (309-406)||(22694012-22694108)
chr6 (302-406)||(19479220-19479324)
chr6 (319-408)||(17289229-17289318)
[»] chr5 (11 HSPs)
chr5 (302-406)||(558202-558306)
chr5 (302-406)||(36425071-36425175)
chr5 (302-406)||(36940748-36940852)
chr5 (302-406)||(41998148-41998252)
chr5 (302-406)||(26668711-26668814)
chr5 (302-406)||(26940308-26940411)
chr5 (302-406)||(39519818-39519922)
chr5 (308-406)||(17550056-17550154)
chr5 (111-158)||(8223960-8224007)
chr5 (302-406)||(25688156-25688260)
chr5 (310-387)||(41318897-41318974)
[»] chr3 (7 HSPs)
chr3 (302-406)||(3674072-3674176)
chr3 (302-406)||(18468645-18468749)
chr3 (303-406)||(12970369-12970472)
chr3 (302-406)||(8884676-8884780)
chr3 (302-406)||(23664680-23664784)
chr3 (109-158)||(18370940-18370989)
chr3 (312-405)||(16452890-16452983)
[»] chr1 (8 HSPs)
chr1 (302-406)||(10136758-10136862)
chr1 (302-406)||(25845189-25845293)
chr1 (313-408)||(27306973-27307068)
chr1 (111-158)||(30196161-30196208)
chr1 (309-406)||(16037047-16037144)
chr1 (302-399)||(11807637-11807734)
chr1 (111-156)||(52860507-52860552)
chr1 (351-406)||(41862242-41862297)
[»] scaffold0067 (1 HSPs)
scaffold0067 (302-406)||(32915-33019)
[»] scaffold0061 (1 HSPs)
scaffold0061 (302-406)||(48442-48546)
[»] scaffold0017 (1 HSPs)
scaffold0017 (302-406)||(150087-150191)
[»] scaffold0011 (1 HSPs)
scaffold0011 (302-406)||(2710-2814)
[»] scaffold0108 (1 HSPs)
scaffold0108 (309-406)||(21241-21338)
[»] scaffold0091 (1 HSPs)
scaffold0091 (109-158)||(15428-15477)
[»] scaffold0070 (2 HSPs)
scaffold0070 (302-406)||(59912-60016)
scaffold0070 (302-406)||(64114-64218)
[»] scaffold0060 (1 HSPs)
scaffold0060 (312-406)||(51407-51501)
[»] scaffold0015 (1 HSPs)
scaffold0015 (302-406)||(212855-212959)


Alignment Details
Target: chr8 (Bit Score: 98; Significance: 4e-48; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 302 - 407
Target Start/End: Complemental strand, 28860312 - 28860207
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgt 401  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
28860312 aaggataagataatagaaactcttaatgagatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgtctatacgaatgt 28860213  T
402 ggaaca 407  Q
    ||||||    
28860212 ggaaca 28860207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 302 - 406
Target Start/End: Original strand, 4241564 - 4241668
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgt 401  Q
    |||||| |||||||||||||||||||||| ||||||| | ||||| || |||||||| || ||||| |||||||||||||| |||| |||||||||||||    
4241564 aaggatgagataatagaaactcttaatgagatctatactctatgtggagtggagtacctagctacaggagtactcttgatagactcacctatacgaatgt 4241663  T
402 ggaac 406  Q
    |||||    
4241664 ggaac 4241668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 28860554 - 28860501
Alignment:
109 ggaaatgttattttaacatagggacattatagtacttttaaatataaacatcac 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28860554 ggaaatgttattttaacatagggacattatagtacttttaaatataaacatcac 28860501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 302 - 406
Target Start/End: Complemental strand, 17021802 - 17021698
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgt 401  Q
    |||||| |||||||||||||||||||||| ||||||| | ||||| || |||||||| || ||||||||||| |||||||| |  | |||||||||||||    
17021802 aaggatgagataatagaaactcttaatgagatctatactctatgtggagtggagtacctagctacatgagtaatcttgatagaaccacctatacgaatgt 17021703  T
402 ggaac 406  Q
    |||||    
17021702 ggaac 17021698  T

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Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 302 - 406
Target Start/End: Complemental strand, 17552239 - 17552135
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgt 401  Q
    |||||| |||||||||||||||||||||| ||||||| | ||||| || |||||||| || ||||||||||| |||||||| |  | |||||||||||||    
17552239 aaggatgagataatagaaactcttaatgagatctatactctatgtggagtggagtacctagctacatgagtaatcttgatagaaccacctatacgaatgt 17552140  T
402 ggaac 406  Q
    |||||    
17552139 ggaac 17552135  T

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Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 406
Target Start/End: Original strand, 8329863 - 8329967
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgt 401  Q
    |||||| || |||||||||||||||||||  |||||| | |||||||| ||| |||| ||  |||| |||||| |||||||||||| |||||| ||||||    
8329863 aaggatgaggtaatagaaactcttaatgaggtctatactctatgttgagtggggtacctagttacaagagtacccttgataaactcacctatatgaatgt 8329962  T
402 ggaac 406  Q
    |||||    
8329963 ggaac 8329967  T

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Target: chr8; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 111 - 158
Target Start/End: Complemental strand, 43325636 - 43325589
Alignment:
111 aaatgttattttaacatagggacattatagtacttttaaatataaaca 158  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||    
43325636 aaatgttattttaacataggggcattatagtacttttaaatataaaca 43325589  T

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Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 302 - 406
Target Start/End: Complemental strand, 19431221 - 19431117
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgt 401  Q
    |||||| || |||||  |||||||||||| || |||| | |||||||| ||| ||||||| ||||| ||||||  |||||| |||| |||||||||||||    
19431221 aaggatgagttaataacaactcttaatgagatttatactctatgttgactggggtacatagctacaggagtacctttgatagactcacctatacgaatgt 19431122  T
402 ggaac 406  Q
    |||||    
19431121 ggaac 19431117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 302 - 406
Target Start/End: Complemental strand, 19567370 - 19567266
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgt 401  Q
    |||||| || |||||  |||||||||||| || |||| | |||||||| ||| ||||||| ||||| ||||||  |||||| |||| |||||||||||||    
19567370 aaggatgagttaataacaactcttaatgagatttatactctatgttgactggggtacatagctacaggagtacctttgatagactcacctatacgaatgt 19567271  T
402 ggaac 406  Q
    |||||    
19567270 ggaac 19567266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 312 - 405
Target Start/End: Original strand, 4540984 - 4541077
Alignment:
312 taatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgtggaa 405  Q
    ||||| ||||||||||||| ||||||| | ||||| || |||||||| || ||||| |||||||||||||| |||| ||| |  ||||||||||    
4540984 taatataaactcttaatgagatctatactctatgtggagtggagtacctagctacaagagtactcttgatagactcacctttgtgaatgtggaa 4541077  T

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Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 9636150 - 9636199
Alignment:
109 ggaaatgttattttaacatagggacattatagtacttttaaatataaaca 158  Q
    |||||| |||||||||||||||| |||||||||||||||||| |||||||    
9636150 ggaaatattattttaacataggggcattatagtacttttaaaaataaaca 9636199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 406
Target Start/End: Complemental strand, 21959993 - 21959889
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgt 401  Q
    |||||| || |||||||||||| |||||| ||||||| | ||| |||| ||| |||| ||  |||| |||||  ||||||| |||| |||||||||||||    
21959993 aaggatgaggtaatagaaactcgtaatgagatctatactctatattgagtggggtacctagttacaggagtatccttgatagactcacctatacgaatgt 21959894  T
402 ggaac 406  Q
    |||||    
21959893 ggaac 21959889  T

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Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 9579250 - 9579299
Alignment:
109 ggaaatgttattttaacatagggacattatagtacttttaaatataaaca 158  Q
    |||||||||||||||||||| ||  ||||| |||||||||||||||||||    
9579250 ggaaatgttattttaacataagggtattatggtacttttaaatataaaca 9579299  T

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Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 302 - 405
Target Start/End: Complemental strand, 13061001 - 13060898
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgt 401  Q
    |||||| |||||||||||||||||||||| ||||||| | |||||||| ||||||||||| ||||| ||||||||||||||||||| ||||||| |||||    
13061001 aaggatgagataatagaaactcttaatgagatctatactctatgttgagtggagtacatagctacaggagtactcttgataaactcacctatacaaatgt 13060902  T
402 ggaa 405  Q
    ||||    
13060901 ggaa 13060898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 302 - 402
Target Start/End: Original strand, 33467620 - 33467720
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgt 401  Q
    |||||| |||||||||||||||||||||| ||||||| | |||||||| ||||| ||||| ||||| |||||||||||||| |||| |||||||||||||    
33467620 aaggatgagataatagaaactcttaatgagatctatactctatgttgagtggagcacatagctacaggagtactcttgatagactcacctatacgaatgt 33467719  T
402 g 402  Q
    |    
33467720 g 33467720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 302 - 406
Target Start/End: Original strand, 37263122 - 37263226
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgt 401  Q
    |||||| |||||||||||||||||||||| ||||||| | ||||| || |||||||| || ||||| |||||||||||||| |||| |||||||||||||    
37263122 aaggatgagataatagaaactcttaatgagatctatactctatgtggagtggagtacctagctacaggagtactcttgatagactcacctatacgaatgt 37263221  T
402 ggaac 406  Q
    |||||    
37263222 ggaac 37263226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 309 - 406
Target Start/End: Complemental strand, 19103505 - 19103408
Alignment:
309 agataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgtggaac 406  Q
    |||||||||||||||||||||| ||||||||| ||||  || |||| |||||| ||||| |||||||||||||| |||| ||||||||||||||||||    
19103505 agataatagaaactcttaatgagatctatattctatgcggagtggaatacatagctacaggagtactcttgatagactcacctatacgaatgtggaac 19103408  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 302 - 406
Target Start/End: Original strand, 7899439 - 7899543
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgt 401  Q
    |||||| || ||||||||||||||||||||||||||| | |||||||| ||| |||| ||  |||| |||||| ||||||| |||| ||||||||||| |    
7899439 aaggatgaggtaatagaaactcttaatgaaatctatactctatgttgagtggggtacctagttacaggagtacccttgatagactcacctatacgaattt 7899538  T
402 ggaac 406  Q
    |||||    
7899539 ggaac 7899543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 302 - 406
Target Start/End: Original strand, 8028889 - 8028993
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgt 401  Q
    |||||| |||||||| || |||||||||| | ||||  | |||||||| ||||||||||| ||||||| |||||||||||| |||| |||||||||||||    
8028889 aaggatgagataatataatctcttaatgagacctatcctctatgttgagtggagtacatagctacatgggtactcttgatagactcacctatacgaatgt 8028988  T
402 ggaac 406  Q
     ||||    
8028989 agaac 8028993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 11671762 - 11671810
Alignment:
110 gaaatgttattttaacatagggacattatagtacttttaaatataaaca 158  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||    
11671762 gaaatgttattttaacataggaacattatagtacttttaaatataaaca 11671810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 342 - 405
Target Start/End: Complemental strand, 19907784 - 19907721
Alignment:
342 tatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgtggaa 405  Q
    |||||||| ||||||||||| ||||||||||||||||||| ||||| ||||||| |||||||||    
19907784 tatgttgagtggagtacatagctacatgagtactcttgatgaactcacctatacaaatgtggaa 19907721  T

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Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 312 - 406
Target Start/End: Complemental strand, 24491266 - 24491172
Alignment:
312 taatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgtggaac 406  Q
    ||||||||||||||||| | ||||||| | |||||||| ||| ||||| | ||||| |||||| ||||||| |||| |||||| |||||||||||    
24491266 taatagaaactcttaattagatctatactctatgttgagtggggtacaaagctacaagagtacccttgatagactcacctatatgaatgtggaac 24491172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 406
Target Start/End: Original strand, 17681662 - 17681759
Alignment:
309 agataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgtggaac 406  Q
    |||||||| ||| | ||||||| ||||||| | |||||||| ||||||||||  ||||||||||| |||||||| |||| || |||||||||| ||||    
17681662 agataatataaattgttaatgagatctatactttatgttgagtggagtacatggctacatgagtaatcttgatagactcaccaatacgaatgttgaac 17681759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 394
Target Start/End: Complemental strand, 12875858 - 12875782
Alignment:
318 aaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctata 394  Q
    ||||||||||||| ||||||| | ||| | || ||||||||||| ||||||| |||||||||||| |||| ||||||    
12875858 aaactcttaatgagatctatactctatatggagtggagtacatagctacatgcgtactcttgatagactcacctata 12875782  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 406
Target Start/End: Original strand, 17681860 - 17681924
Alignment:
342 tatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgtggaac 406  Q
    |||||||| |||||||  |||||| | ||||||| |||||| |||| || |||||||||||||||    
17681860 tatgttgagtggagtatgtaactagaggagtacttttgatagactcaccaatacgaatgtggaac 17681924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 303 - 405
Target Start/End: Complemental strand, 12802816 - 12802714
Alignment:
303 aggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgtg 402  Q
    ||||| ||||||||||||||||| |||| ||||||| | |||||||| ||||||||||| |||||||||||||||||||| |||| ||||||||||||||    
12802816 aggatgagataatagaaactcttcatgagatctatactctatgttgagtggagtacatagctacatgagtactcttgatagactcacctatacgaatgtg 12802717  T
403 gaa 405  Q
    |||    
12802716 gaa 12802714  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 302 - 406
Target Start/End: Original strand, 10391653 - 10391757
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgt 401  Q
    |||||| |||||||||||||| ||||||| || |||| | |||||||| ||||||||||| ||||| |||||||||||||| |||| ||||||| |||||    
10391653 aaggatgagataatagaaacttttaatgagatatatactctatgttgagtggagtacatagctacaggagtactcttgatagactcacctataccaatgt 10391752  T
402 ggaac 406  Q
    |||||    
10391753 ggaac 10391757  T

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Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 302 - 405
Target Start/End: Complemental strand, 2596305 - 2596202
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgt 401  Q
    |||||| | |||||||||||||||||||| ||||||| | |||||||| |||||||||||  |||| ||||||||||| || |||| |||||||||||||    
2596305 aaggatgaaataatagaaactcttaatgagatctatactctatgttgagtggagtacataggtacaggagtactcttgttagactcacctatacgaatgt 2596206  T
402 ggaa 405  Q
    ||||    
2596205 ggaa 2596202  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 303 - 404
Target Start/End: Complemental strand, 15975404 - 15975303
Alignment:
303 aggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgtg 402  Q
    ||||| |||||||||||||||||||| | || |||| | ||| | || || |||||||| |||||||||||||||||||| |||||||||||||||| ||    
15975404 aggatgagataatagaaactcttaataagatatatactctatttggagtgaagtacatagctacatgagtactcttgatagactcgcctatacgaatatg 15975305  T
403 ga 404  Q
    ||    
15975304 ga 15975303  T

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Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 308 - 406
Target Start/End: Complemental strand, 14784044 - 14783946
Alignment:
308 aagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgtggaac 406  Q
    ||||||||||||||||||||||| |||| || || || |  | ||||||||| | |||||||||||||||||||| ||||  |||||||||||||||||    
14784044 aagataatagaaactcttaatgagatctgtaatgcatatgaagtggagtacaaatctacatgagtactcttgatagactcatctatacgaatgtggaac 14783946  T

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Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 308 - 406
Target Start/End: Complemental strand, 15234077 - 15233979
Alignment:
308 aagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgtggaac 406  Q
    |||||||||| |||||||||||| ||||||| || || |  | ||||||||| | |||||||||||||||||||| ||||  |||||||||||||||||    
15234077 aagataataggaactcttaatgagatctataatgcatatgaagtggagtacaaatctacatgagtactcttgatagactcatctatacgaatgtggaac 15233979  T

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Target: chr7; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 311 - 406
Target Start/End: Original strand, 7018152 - 7018247
Alignment:
311 ataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgtggaac 406  Q
    ||||||| |||||||||||| ||||||| | |||||||| | | ||||||| ||||| |||||||||||||| | ||  |||||||||||||||||    
7018152 ataatagcaactcttaatgagatctatactctatgttgagtagggtacatagctacaggagtactcttgatagattcatctatacgaatgtggaac 7018247  T

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Target: chr7; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 311 - 406
Target Start/End: Original strand, 7033510 - 7033605
Alignment:
311 ataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgtggaac 406  Q
    ||||||| |||||||||||| ||||||| | |||||||| | | ||||||| ||||| |||||||||||||| | ||  |||||||||||||||||    
7033510 ataatagcaactcttaatgagatctatactctatgttgagtagggtacatagctacaggagtactcttgatagattcatctatacgaatgtggaac 7033605  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 309 - 406
Target Start/End: Original strand, 44630049 - 44630146
Alignment:
309 agataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgtggaac 406  Q
    |||||||||||||||||||||| ||||||| | ||||| || ||||||||||||||| | |||||||||||||| |||||||||||| ||||||||||    
44630049 agataatagaaactcttaatgagatctatactctatgtggagtggagtacataactaaaggagtactcttgatagactcgcctatacaaatgtggaac 44630146  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 302 - 406
Target Start/End: Original strand, 9183976 - 9184080
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgt 401  Q
    |||||| |||||||||||||||||||||| ||||||| | ||||| || |||||||| || ||||| |||||||||||||| |||| |||||||||||||    
9183976 aaggatgagataatagaaactcttaatgagatctatactctatgtggagtggagtacctagctacaggagtactcttgatagactcacctatacgaatgt 9184075  T
402 ggaac 406  Q
    |||||    
9184076 ggaac 9184080  T

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Target: chr2; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 302 - 406
Target Start/End: Original strand, 17973909 - 17974013
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgt 401  Q
    |||||| |||||||||||||||||||||| ||||||| | ||||| || |||||||| || ||||| |||||||||||||| |||| |||||||||||||    
17973909 aaggatgagataatagaaactcttaatgagatctatactctatgtggagtggagtacctagctacaggagtactcttgatagactcacctatacgaatgt 17974008  T
402 ggaac 406  Q
    |||||    
17974009 ggaac 17974013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 309 - 406
Target Start/End: Original strand, 25483336 - 25483433
Alignment:
309 agataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgtggaac 406  Q
    |||||||||||||||||||||| ||||||| | || || || ||||||||||| ||||||||| |||||||||| |||| ||||||||||||||||||    
25483336 agataatagaaactcttaatgagatctatactctacgtggagtggagtacatagctacatgagcactcttgatatactcacctatacgaatgtggaac 25483433  T

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Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 309 - 406
Target Start/End: Original strand, 25490942 - 25491039
Alignment:
309 agataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgtggaac 406  Q
    |||||||||||||||||||||| ||||||| | || || || ||||||||||| ||||||||| |||||||||| |||| ||||||||||||||||||    
25490942 agataatagaaactcttaatgagatctatactctacgtggagtggagtacatagctacatgagcactcttgatatactcacctatacgaatgtggaac 25491039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 302 - 406
Target Start/End: Complemental strand, 30652451 - 30652347
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgt 401  Q
    |||||| |||||||||||||||||||||| ||||||| | ||||| || |||||||| || ||||| |||||||||||||| |||| ||||| |||||||    
30652451 aaggatgagataatagaaactcttaatgagatctatactctatgtggagtggagtacctagctacaggagtactcttgatagactcacctatgcgaatgt 30652352  T
402 ggaac 406  Q
    |||||    
30652351 ggaac 30652347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 303 - 406
Target Start/End: Original strand, 24536578 - 24536681
Alignment:
303 aggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgtg 402  Q
    ||||| |||||||||||| ||||||||| ||||||| | |||||||| ||||||||||| || || |||||||||||||| | || ||||||||||||||    
24536578 aggatgagataatagaaaatcttaatgagatctatactctatgttgagtggagtacatagctgcaggagtactcttgatatattcacctatacgaatgtg 24536677  T
403 gaac 406  Q
    ||||    
24536678 gaac 24536681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 11738734 - 11738686
Alignment:
110 gaaatgttattttaacatagggacattatagtacttttaaatataaaca 158  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
11738734 gaaatgttattttaacatagggacattatagtacttttaaatataaaca 11738686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 399
Target Start/End: Original strand, 13290241 - 13290337
Alignment:
303 aggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaat 399  Q
    ||||| ||||||||| ||||||||||||  || ||| | ||||| || ||||||||||| || || |||||||||||||| |||| | |||||||||    
13290241 aggatgagataataggaactcttaatgaggtcgatactttatgtggagtggagtacatagctgcaagagtactcttgatagactcacttatacgaat 13290337  T

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Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 406
Target Start/End: Original strand, 15445852 - 15445955
Alignment:
303 aggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgtg 402  Q
    ||||| |||||||  ||||||||||||  ||||||| | ||||| || ||||||||||| ||||| || | ||||||||| |||| |  |||||||||||    
15445852 aggatgagataattaaaactcttaatgtgatctataatctatgtggagtggagtacatagctacaagatttctcttgatagactcccaaatacgaatgtg 15445951  T
403 gaac 406  Q
    ||||    
15445952 gaac 15445955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 309 - 406
Target Start/End: Original strand, 14912890 - 14912986
Alignment:
309 agataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgtggaac 406  Q
    |||||||| ||||||||||||| || |||| | |||||||| ||| ||||||| ||||  |||||| ||||||  | | |||||||||||||||||||    
14912890 agataataaaaactcttaatgagatatatactctatgttgagtggggtacatagctacgcgagtacccttgat-gatttgcctatacgaatgtggaac 14912986  T

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Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 302 - 402
Target Start/End: Original strand, 19992967 - 19993067
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgt 401  Q
    |||||| |||||||||||||||||||||| ||||||| | |||||||| ||||||||||| |||||||| ||||||||| | |||| |||||||||||||    
19992967 aaggatgagataatagaaactcttaatgagatctatactatatgttgagtggagtacatagctacatgattactcttgaaagactcacctatacgaatgt 19993066  T
402 g 402  Q
    |    
19993067 g 19993067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 302 - 402
Target Start/End: Original strand, 16834720 - 16834820
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgt 401  Q
    |||||| |||||||||||||||||||||| ||||||| | ||||| || |||||||| || ||||| |||||| ||||||| |||| ||||| |||||||    
16834720 aaggatgagataatagaaactcttaatgagatctatactctatgtggagtggagtacctagctacaggagtacccttgatagactcacctatgcgaatgt 16834819  T
402 g 402  Q
    |    
16834820 g 16834820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 406
Target Start/End: Complemental strand, 10486283 - 10486179
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgt 401  Q
    |||||| || |||||  |||||||||||| ||||||| | |||||||| ||| ||||||| ||||| |||||| ||||||| |||| |||||||||||||    
10486283 aaggatgagttaataacaactcttaatgagatctatactctatgttgagtggggtacatagctacaggagtacccttgatagactcacctatacgaatgt 10486184  T
402 ggaac 406  Q
     ||||    
10486183 agaac 10486179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 309 - 406
Target Start/End: Original strand, 22694012 - 22694108
Alignment:
309 agataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatg-agtactcttgataaactcgcctatacgaatgtggaac 406  Q
    |||||||||||||||||||||| ||||||| | ||||| || ||| ||||||| ||||| | ||||||||||  |||||||||||||||||||| ||||    
22694012 agataatagaaactcttaatgagatctatactctatgtggagtggggtacatagctacacgaagtactcttg--aaactcgcctatacgaatgtcgaac 22694108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 302 - 406
Target Start/End: Complemental strand, 19479324 - 19479220
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgt 401  Q
    |||||| || |||||| |||||||||||| ||||||| | |||||||| | | ||||||| ||||| || |||  |||||| |||| |||||||||||||    
19479324 aaggatgagttaatagcaactcttaatgagatctatactctatgttgagtagggtacatagctacaggaatacctttgatagactcacctatacgaatgt 19479225  T
402 ggaac 406  Q
    |||||    
19479224 ggaac 19479220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 319 - 408
Target Start/End: Original strand, 17289229 - 17289318
Alignment:
319 aactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgtggaacat 408  Q
    |||||||||||| || |||| | |||||||| ||| ||||||| |||||||| ||| ||||||| |||| ||||| ||| ||||||||||    
17289229 aactcttaatgagatatatactctatgttgagtggggtacatagctacatgaatacccttgatagactcacctatccgattgtggaacat 17289318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 302 - 406
Target Start/End: Complemental strand, 558306 - 558202
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgt 401  Q
    |||||| |||||||||||||||||||||| ||||||| | ||||| || |||||||| || ||||| |||||||||||||| |||| |||||||||||||    
558306 aaggatgagataatagaaactcttaatgagatctatactctatgtggagtggagtacctagctacaggagtactcttgatagactcacctatacgaatgt 558207  T
402 ggaac 406  Q
    |||||    
558206 ggaac 558202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 302 - 406
Target Start/End: Complemental strand, 36425175 - 36425071
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgt 401  Q
    |||||| |||||||||||||||||||||| ||||||| | ||||| || |||||||| || ||||| |||||||||||||| |||| |||||||||||||    
36425175 aaggatgagataatagaaactcttaatgagatctatactctatgtggagtggagtacctagctacaggagtactcttgatagactcacctatacgaatgt 36425076  T
402 ggaac 406  Q
    |||||    
36425075 ggaac 36425071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 302 - 406
Target Start/End: Original strand, 36940748 - 36940852
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgt 401  Q
    |||||| |||||||||||||||||||||| ||||||| | ||||| || |||||||| || ||||| |||||||||||||| |||| |||||||||||||    
36940748 aaggatgagataatagaaactcttaatgagatctatactctatgtggagtggagtacctagctacaggagtactcttgatagactcacctatacgaatgt 36940847  T
402 ggaac 406  Q
    |||||    
36940848 ggaac 36940852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 302 - 406
Target Start/End: Complemental strand, 41998252 - 41998148
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgt 401  Q
    |||||| |||||||||||||||||||||| ||||||| | ||||| || |||||||| || ||||| |||||||||||||| |||| |||||||||||||    
41998252 aaggatgagataatagaaactcttaatgagatctatactctatgtggagtggagtacctagctacaggagtactcttgatagactcacctatacgaatgt 41998153  T
402 ggaac 406  Q
    |||||    
41998152 ggaac 41998148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 302 - 406
Target Start/End: Complemental strand, 26668814 - 26668711
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgt 401  Q
    |||||| |||||||||||||||||||||| | ||||| | ||||| || |||||||| || ||||| |||||||||||||| |||| |||||||||||||    
26668814 aaggatgagataatagaaactcttaatgaga-ctatactctatgtggagtggagtacctagctacaggagtactcttgatatactcacctatacgaatgt 26668716  T
402 ggaac 406  Q
    |||||    
26668715 ggaac 26668711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 302 - 406
Target Start/End: Complemental strand, 26940411 - 26940308
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgt 401  Q
    |||||| |||||||||||||||||||||| | ||||| | ||||| || |||||||| || ||||| |||||||||||||| |||| |||||||||||||    
26940411 aaggatgagataatagaaactcttaatgaga-ctatactctatgtggagtggagtacctagctacaggagtactcttgatatactcacctatacgaatgt 26940313  T
402 ggaac 406  Q
    |||||    
26940312 ggaac 26940308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 302 - 406
Target Start/End: Complemental strand, 39519922 - 39519818
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgt 401  Q
    |||||| |||||||||||||||||||||| |||| || | ||||| || |||||||| || ||||| |||||||||||||| |||| ||||| |||||||    
39519922 aaggatgagataatagaaactcttaatgagatctctactctatgtggagtggagtacctagctacaggagtactcttgatagactcacctatgcgaatgt 39519823  T
402 ggaac 406  Q
    |||||    
39519822 ggaac 39519818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 308 - 406
Target Start/End: Original strand, 17550056 - 17550154
Alignment:
308 aagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgtggaac 406  Q
    |||||||||| |||||||||||| ||||||| || || |  | ||||||||| | |||||||||||||||||||| ||||  |||||||||||||||||    
17550056 aagataataggaactcttaatgagatctataatgcatatgaagtggagtacaaatctacatgagtactcttgatagactcatctatacgaatgtggaac 17550154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 111 - 158
Target Start/End: Complemental strand, 8224007 - 8223960
Alignment:
111 aaatgttattttaacatagggacattatagtacttttaaatataaaca 158  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
8224007 aaatgttattttaacatagggatattatagtacttttaaatataaaca 8223960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 406
Target Start/End: Original strand, 25688156 - 25688260
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgt 401  Q
    |||||| | ||||| ||||||||||||||  |||||||| ||| |  | ||||||||||| ||| |||||||||||| ||| |||| | |||| ||||||    
25688156 aaggatgaaataatggaaactcttaatgaggtctatattctatatgaagtggagtacatagctaaatgagtactcttaatagactcacttatatgaatgt 25688255  T
402 ggaac 406  Q
    |||||    
25688256 ggaac 25688260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 310 - 387
Target Start/End: Original strand, 41318897 - 41318974
Alignment:
310 gataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactc 387  Q
    ||||||||||||||||||||| ||||||| | ||||| || || ||||  || ||||| |||||||||||||| ||||    
41318897 gataatagaaactcttaatgagatctatactctatgtggagtgtagtatctagctacaagagtactcttgatagactc 41318974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 302 - 406
Target Start/End: Complemental strand, 3674176 - 3674072
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgt 401  Q
    |||||| |||||||||||||||||||||| ||||||| | ||||| || |||||||| || ||||| |||||||||||||| |||| |||||||||||||    
3674176 aaggatgagataatagaaactcttaatgagatctatactctatgtggagtggagtacctagctacaggagtactcttgatagactcacctatacgaatgt 3674077  T
402 ggaac 406  Q
    |||||    
3674076 ggaac 3674072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 302 - 406
Target Start/End: Complemental strand, 18468749 - 18468645
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgt 401  Q
    |||||| |||||||||||||||||||||| ||||||| | ||||| || |||||||| || ||||| |||||||||||||| |||| |||||||||||||    
18468749 aaggatgagataatagaaactcttaatgagatctatactctatgtggagtggagtacctagctacaggagtactcttgatagactcacctatacgaatgt 18468650  T
402 ggaac 406  Q
    |||||    
18468649 ggaac 18468645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 303 - 406
Target Start/End: Original strand, 12970369 - 12970472
Alignment:
303 aggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgtg 402  Q
    |||||||||||||||||||||||||||| ||||||| | |||  ||| ||||||||||| ||||||||||||| |||||  |||| ||||||||||||||    
12970369 aggataagataatagaaactcttaatgagatctatactctataatgagtggagtacatagctacatgagtactattgatggactcacctatacgaatgtg 12970468  T
403 gaac 406  Q
    ||||    
12970469 gaac 12970472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 302 - 406
Target Start/End: Complemental strand, 8884780 - 8884676
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgt 401  Q
    |||||| |||||||||||||||||||||| ||||||| | || || || |||||||| || ||||| |||||||||||||| |||| |||||||||||||    
8884780 aaggatgagataatagaaactcttaatgagatctatactctacgtggagtggagtacctagctacaggagtactcttgatagactcacctatacgaatgt 8884681  T
402 ggaac 406  Q
    |||||    
8884680 ggaac 8884676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 302 - 406
Target Start/End: Original strand, 23664680 - 23664784
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgt 401  Q
    |||||| |||||||||||||||||||||| ||||||| | ||||| || |||||||| || ||||| |||||||||||||| |||| ||||| |||||||    
23664680 aaggatgagataatagaaactcttaatgagatctatactctatgtggagtggagtacctagctacaggagtactcttgatagactcacctatgcgaatgt 23664779  T
402 ggaac 406  Q
    |||||    
23664780 ggaac 23664784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 18370940 - 18370989
Alignment:
109 ggaaatgttattttaacatagggacattatagtacttttaaatataaaca 158  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||    
18370940 ggaaatgttattttaacataggggcattatagtacttttaaaaataaaca 18370989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 312 - 405
Target Start/End: Original strand, 16452890 - 16452983
Alignment:
312 taatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgtggaa 405  Q
    ||||| ||||||||||||| ||||||| | ||||| || |||||||| || ||||| |||||||||||||| |||| ||| |  ||||||||||    
16452890 taatataaactcttaatgagatctatactctatgtggagtggagtacctagctacaagagtactcttgatagactcacctttgtgaatgtggaa 16452983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 302 - 406
Target Start/End: Complemental strand, 10136862 - 10136758
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgt 401  Q
    |||||| |||||||||||||||||||||| ||||||| | ||||| || |||||||| || ||||| |||||||||||||| |||| |||||||||||||    
10136862 aaggatgagataatagaaactcttaatgagatctatactctatgtggagtggagtacctagctacaggagtactcttgatagactcacctatacgaatgt 10136763  T
402 ggaac 406  Q
    |||||    
10136762 ggaac 10136758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 302 - 406
Target Start/End: Complemental strand, 25845293 - 25845189
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgt 401  Q
    |||||| |||||||||||||||||||||| ||||||| | ||||| || |||||||| || ||||| |||||||||||||| |||| ||||| |||||||    
25845293 aaggatgagataatagaaactcttaatgagatctatactctatgtggagtggagtacctagctacaggagtactcttgatagactcacctatgcgaatgt 25845194  T
402 ggaac 406  Q
    |||||    
25845193 ggaac 25845189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 313 - 408
Target Start/End: Original strand, 27306973 - 27307068
Alignment:
313 aatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgtggaacat 408  Q
    |||||||||||||||||| || |||| | |||   || ||||||| ||| |||||||||||||||| ||| |||||||||||||||||||||||||    
27306973 aatagaaactcttaatgagatttatagtatataaggagtggagtagatagctacatgagtactctttatagactcgcctatacgaatgtggaacat 27307068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 111 - 158
Target Start/End: Original strand, 30196161 - 30196208
Alignment:
111 aaatgttattttaacatagggacattatagtacttttaaatataaaca 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
30196161 aaatgttattttaacatagggacattatagtacttttaaatataaaca 30196208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 309 - 406
Target Start/End: Complemental strand, 16037144 - 16037047
Alignment:
309 agataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgtggaac 406  Q
    |||| |||||||||||||||||  | |||| | ||||| || |||||||||| ||||||| |||| |||||||| |||| ||||||||||||||||||    
16037144 agatgatagaaactcttaatgaggtatatactctatgtggagtggagtacatgactacattagtattcttgatagactcacctatacgaatgtggaac 16037047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 302 - 399
Target Start/End: Complemental strand, 11807734 - 11807637
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaat 399  Q
    |||||| |||||||||||||| ||||||| ||||||| | |||||| | |||| |||||| ||||| |||||||||||||| |||  || ||||||||    
11807734 aaggatgagataatagaaacttttaatgagatctatactttatgttaagtggattacatagctacaggagtactcttgatagactgaccgatacgaat 11807637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 111 - 156
Target Start/End: Original strand, 52860507 - 52860552
Alignment:
111 aaatgttattttaacatagggacattatagtacttttaaatataaa 156  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
52860507 aaatgttattttaacatagggacgttatagtacttttaaatataaa 52860552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 406
Target Start/End: Original strand, 41862242 - 41862297
Alignment:
351 tggagtacataactacatgagtactcttgataaactcgcctatacgaatgtggaac 406  Q
    |||||||| |||||||||||||||||||||||||||| |||||  |||| ||||||    
41862242 tggagtacctaactacatgagtactcttgataaactcacctatgtgaatatggaac 41862297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 302 - 406
Target Start/End: Original strand, 32915 - 33019
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgt 401  Q
    |||||| ||| ||||| |||||||||||| || |||| | |||||||| |||| | |||||||||| |||||||||||||| |||| |||||||||||||    
32915 aaggatgagagaatagcaactcttaatgagatttatactctatgttgagtggattgcataactacaggagtactcttgatagactctcctatacgaatgt 33014  T
402 ggaac 406  Q
    |||||    
33015 ggaac 33019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 302 - 406
Target Start/End: Original strand, 48442 - 48546
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgt 401  Q
    |||||| || ||||||||||||||||||| ||||||| | |||||||| ||| |||| ||  |||| |||||| ||||||| |||| |||||||||||||    
48442 aaggatgaggtaatagaaactcttaatgagatctatactctatgttgagtggggtacctagttacaggagtacccttgatagactcacctatacgaatgt 48541  T
402 ggaac 406  Q
    |||||    
48542 ggaac 48546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 302 - 406
Target Start/End: Complemental strand, 150191 - 150087
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgt 401  Q
    |||||| || ||||||||||||||||||| ||||||| | |||||||| ||| |||| ||  |||| |||||| ||||||| |||| |||||||||||||    
150191 aaggatgaggtaatagaaactcttaatgagatctatactctatgttgagtggggtacctagttacaggagtacccttgatagactcacctatacgaatgt 150092  T
402 ggaac 406  Q
    |||||    
150091 ggaac 150087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 302 - 406
Target Start/End: Complemental strand, 2814 - 2710
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgt 401  Q
    |||||| || ||||||||||||||||||| |||||||   |||||||| ||| ||||||||||||| ||||||  |||||| |||| ||||||| |||||    
2814 aaggatgagttaatagaaactcttaatgagatctatacactatgttgagtggggtacataactacaggagtacctttgatagactcacctatacaaatgt 2715  T
402 ggaac 406  Q
    |||||    
2714 ggaac 2710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 309 - 406
Target Start/End: Complemental strand, 21338 - 21241
Alignment:
309 agataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgtggaac 406  Q
    |||||||||||||||||||||| || |||| | ||||| || |||||||||||  || |  ||||||||||||| |||| ||||||||||||||||||    
21338 agataatagaaactcttaatgagatttatactctatgtggagtggagtacatagttatagaagtactcttgatagactcacctatacgaatgtggaac 21241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 15428 - 15477
Alignment:
109 ggaaatgttattttaacatagggacattatagtacttttaaatataaaca 158  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
15428 ggaaatgttattttaacatagggacattatagtacttttaaatctaaaca 15477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 406
Target Start/End: Complemental strand, 60016 - 59912
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgt 401  Q
    |||||| || ||||||||||||||||||| ||||||| | |||||||| ||| |||| ||  |||| || ||| ||||||| |||| |||||||||||||    
60016 aaggatgaggtaatagaaactcttaatgagatctatactctatgttgagtggggtacctagttacaggattacccttgatagactcacctatacgaatgt 59917  T
402 ggaac 406  Q
    |||||    
59916 ggaac 59912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 406
Target Start/End: Complemental strand, 64218 - 64114
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgt 401  Q
    |||||| || ||||||||||||||||||| ||||||| | |||||||| ||| |||| ||  |||| || ||| ||||||| |||| |||||||||||||    
64218 aaggatgaggtaatagaaactcttaatgagatctatactctatgttgagtggggtacctagttacaggattacccttgatagactcacctatacgaatgt 64119  T
402 ggaac 406  Q
    |||||    
64118 ggaac 64114  T

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Target: scaffold0060 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 312 - 406
Target Start/End: Original strand, 51407 - 51501
Alignment:
312 taatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgtggaac 406  Q
    ||||| ||||||||||||| ||||||| | |||||||| ||| |||| ||  |||| |||||| ||||||| |||| ||||||||||||||||||    
51407 taatataaactcttaatgagatctatactctatgttgagtggggtacctagttacaggagtacccttgatagactcacctatacgaatgtggaac 51501  T

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Target: scaffold0015 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 406
Target Start/End: Original strand, 212855 - 212959
Alignment:
302 aaggataagataatagaaactcttaatgaaatctatattgtatgttgaatggagtacataactacatgagtactcttgataaactcgcctatacgaatgt 401  Q
    |||||| || |||||||||||| |||||| ||||||| | ||| |||| ||| |||| ||  |||| |||||  ||||||| |||| |||||||||||||    
212855 aaggatgaggtaatagaaactcgtaatgagatctatactctatattgagtggggtacctagttacaggagtatccttgatagactcacctatacgaatgt 212954  T
402 ggaac 406  Q
    |||||    
212955 ggaac 212959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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