View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1715_low_56 (Length: 422)
Name: NF1715_low_56
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_56 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 120 - 224
Target Start/End: Original strand, 26965893 - 26965997
Alignment:
| Q |
120 |
ttatgcaaagtaaacgagtttctaattagattggcaattctatttataagaaattccggtgagttaactcattaaaaagnnnnnnngttgttctgttttt |
219 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
26965893 |
ttatgcaaagtaaaagagtttctaattagattggcaattctatttataagaaattccggtgagttaactcattaaaaagtttttttgttgttttgttttt |
26965992 |
T |
|
| Q |
220 |
ggttg |
224 |
Q |
| |
|
||||| |
|
|
| T |
26965993 |
ggttg |
26965997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 347 - 399
Target Start/End: Original strand, 26966139 - 26966191
Alignment:
| Q |
347 |
gtttataagctaggaattattgtcaaagttggatttaccgtccgaatactcta |
399 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
26966139 |
gtttataagctaggaaatattgtcaaagttggatttaccgtccgaatactcta |
26966191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 120 - 224
Target Start/End: Original strand, 34672095 - 34672199
Alignment:
| Q |
120 |
ttatgcaaagtaaacgagtttctaattagattggcaattctatttataagaaattccggtgagttaactcattaaaaagnnnnnnngttgttctgttttt |
219 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||| |
|
|
| T |
34672095 |
ttatgcaaagtaaaagagtttctaattagattggcaattctatttataagaaattccggtgagttaactcatcaaaaagtttttttgttgttttgttttt |
34672194 |
T |
|
| Q |
220 |
ggttg |
224 |
Q |
| |
|
||||| |
|
|
| T |
34672195 |
ggttg |
34672199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 347 - 399
Target Start/End: Original strand, 34672322 - 34672374
Alignment:
| Q |
347 |
gtttataagctaggaattattgtcaaagttggatttaccgtccgaatactcta |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34672322 |
gtttataagctaggaattattgtcaaagttggatttaccgtccgaatactcta |
34672374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University