View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_61 (Length: 400)
Name: NF1715_low_61
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_61 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 17 - 391
Target Start/End: Original strand, 41561999 - 41562373
Alignment:
| Q |
17 |
atctcaggtttgggtcaatctgacgcatcatgtgtagtccattttgaaagtactaccattgttgacttctctaacatttatatcgcaccaacgagataaa |
116 |
Q |
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| T |
41561999 |
atctcaggtttgggtcaatctgacgcatcatgtgtggtccattttgaaagtactaccattgttgacttctctaacatttatatcgcaccaacgagataaa |
41562098 |
T |
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| Q |
117 |
atttgagatggattttattaattacatcttatttttatcgatgattcatatgtttctttttaagagaaattctacttttggcaaaaaggtgtatcgcgac |
216 |
Q |
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| T |
41562099 |
atttgagatggattttattaattatatcttatttttatcgatgattcatatgtttctttttaagagaaattctacttttggcaaaaaggtgtatcgtgac |
41562198 |
T |
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| Q |
217 |
aaatatcaagatgttacaatgttatgttgactaaaccctactccgcatctatattttactccccatgaattctagtaaagttgatattcaatggaccaaa |
316 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41562199 |
aaatatcaagatgttacaatattatgttgactaaaccctactccgcatctatattttactccccatgaattctagtaaagttgatattcaatggaccaaa |
41562298 |
T |
|
| Q |
317 |
ataattcgtgatccttttgggacgttcattctcgtgacatataacacctctcttttaataattagcctagtatta |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
41562299 |
ataattcgtgatccttttgggacgttcattctcgtgacatataacacttctcttttaataattagcctagtatta |
41562373 |
T |
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